Non-Coding RNA Search

Ss1.1-Pey1-13E10.5

Sequence:


               
               TTAATAGTATATTTTTTTATTCTTGATTTGGTTTGGGTTGTCAACTATTTTTCATCTTTG
AGATCATGACCATATTCATTATCATACCATAATGAGTCATAGCTGTAGACTCAAGAAAAC
AAATAACAGTTTGAGGGAATATTATATAAGATGATGTGCCCTATTAAAGGATGAAGCAAA
ATAGACAAGCCCAGGGTAGTTTACCCTTAATGCTAGGGGAGGCTCTTGAAACATGATTAA
GTTTTGAGGGAGGACTCTCTAGATATATTTTCTAATGTTCACTACAATAAATATAAGGAA
GCTAAAACACCAATGTGGAATTCATGTTTCCAGATAACATGTATATTCTTCTATAAGAGT
GACAGGATCAAATGCATAACGTAAAGCCTTAAATTGCTGGTTTAGAGAAGATCCTTTTTT
AAAAGATTCTTTTAGTTCATAGAATTGTGTTGTTTGGAACACACGAAACACATTTAATTA
TATTTAATTTCACAACATTGCAAATTTTTCTTGTATTAATTATTGTTCAGACCACTGGTT
ATGCTTTTTTTTTTTTTAATTGATTGGGCCTGAATACAGGCTTTCCAGAGATTTCATTTA
ATACTTTCAAATACCTTTCAGGTAATTATATCATGTTTCTTCATTGGATTTGTAAAACTT
GAAGCCATAAAAATATTAGTTTGGTGTGTATTGGGAAAATAGCTAAAAGTCTAATTTTTA
CCCATTTAGACTTTGTTATTTCCTTGTATAAAGTGACAAATCGGGGCTCTTGGATCAGTG
CCAGCTGTAATGTTTTTTTTTAATGCAGTGGCTGCCTTCTCTTGTCTTCCTATTTTTGAT
AATGCAGATTGTTGGGAAATCTATAAGGAAGTAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAATAGTATATTTTTTTATTCTTGATTTGGTTTGGGTTGTCAACTATTTTTCATCTTTG
AGATCATGACCATATTCATTATCATACCATAATGAGTCATAGCTGTAGACTCAAGAAAAC
AAATAACAGTTTGAGGGAATATTATATAAGATGATGTGCCCTATTAAAGGATGAAGCAAA
ATAGACAAGCCCAGGGTAGTTTACCCTTAATGCTAGGGGAGGCTCTTGAAACATGATTAA
GTTTTGAGGGAGGACTCTCTAGATATATTTTCTAATGTTCACTACAATAAATATAAGGAA
GCTAAAACACCAATGTGGAATTCATGTTTCCAGATAACATGTATATTCTTCTATAAGAGT
GACAGGATCAAATGCATAACGTAAAGCCTTAAATTGCTGGTTTAGAGAAGATCCTTTTTT
AAAAGATTCTTTTAGTTCATAGAATTGTGTTGTTTGGAACACACGAAACACATTTAATTA
TATTTAATTTCACAACATTGCAAATTTTTCTTGTATTAATTATTGTTCAGACCACTGGTT
ATGCTTTTTTTTTTTTTAATTGATTGGGCCTGAATACAGGCTTTCCAGAGATTTCATTTA
ATACTTTCAAATACCTTTCAGGTAATTATATCATGTTTCTTCATTGGATTTGTAAAACTT
GAAGCCATAAAAATATTAGTTTGGTGTGTATTGGGAAAATAGCTAAAAGTCTAATTTTTA
CCCATTTAGACTTTGTTATTTCCTTGTATAAAGTGACAAATCGGGGCTCTTGGATCAGTG
CCAGCTGTAATGTTTTTTTTTAATGCAGTGGCTGCCTTCTCTTGTCTTCCTATTTTTGAT
AATGCAGATTGTTGGGAAATCTATAAGGAAGTAACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               197-313, + strand, RNAz p=0.771969

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-313, + strand, RNAz p=0.771969

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of D87450, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of D87450, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-876, gnl|bosTau2|chr28 (30943954-30944821)
               

               
               5-876, gnl|Hg17|chr10 (88186673-88185800)
               

               
               5-876, gnl|Mm7|chr14 (32177870-32178772)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-876, gnl|bosTau2|chr28 (30943954-30944821)
               

               
               5-876, gnl|Hg17|chr10 (88186673-88185800)
               

               
               5-876, gnl|Mm7|chr14 (32177870-32178772)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	5-876, gnl\|bosTau2\|chr28 (30943954-30944821)
	5-876, gnl\|Hg17\|chr10 (88186673-88185800)
	5-876, gnl\|Mm7\|chr14 (32177870-32178772)