Non-Coding RNA Search

Ss1.1-Pey1-14D03.5

Sequence:


               
               GCCATCAGATTCCTTAAGCTGAGAAGGAAGACAAAAGTCAGCATGTTCAGCCTGCTTCTG
CTGCTGCTGCTTCTCTGCAACACAGGGTCCCACGGCTTCCCAGCAGCAACTTCAGAAACA
CAAGAGCAAGATGTGGAGATAGTGCAGAAATACCTGAAAAACTACTACAACCTGAATAGT
GATGGGGTGCCAGTGGAAAAGAAAAGGAACAGTGGCCTAGTAGTTGAAAAACTAAAGCAA
ATGCAACAATTCTTTGGGCTGAAAGTAACGGGGAAACCAGACGCTGAAACTCTGAATGTG
ATGAAGCAGCCCAGATGTGGGGTTCCTGACGTGGCTGAGTTTGTTCTCACTCCAGGGAAC
CCTCGGTGGGAGAACACACACCTGACCTACAGGATTGAAAATTACACACCAGATCTGTCA
AGAGAAGATGTGGACCGTGCCATTGAGAAAGCCTTTCAACTCTGGAGCAATGTCTCACCC
TTGACCTTCACCAAGGTCTCCGAGGGTCAAGCAGACATAATGATATCCTTTGTCAGGGGA
GATCATCGTGACAATTCTCCCTTTGATGGACCTGGAGGAAACCTTGCTCATGCTTTTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATCAGATTCCTTAAGCTGAGAAGGAAGACAAAAGTCAGCATGTTCAGCCTGCTTCTG
CTGCTGCTGCTTCTCTGCAACACAGGGTCCCACGGCTTCCCAGCAGCAACTTCAGAAACA
CAAGAGCAAGATGTGGAGATAGTGCAGAAATACCTGAAAAACTACTACAACCTGAATAGT
GATGGGGTGCCAGTGGAAAAGAAAAGGAACAGTGGCCTAGTAGTTGAAAAACTAAAGCAA
ATGCAACAATTCTTTGGGCTGAAAGTAACGGGGAAACCAGACGCTGAAACTCTGAATGTG
ATGAAGCAGCCCAGATGTGGGGTTCCTGACGTGGCTGAGTTTGTTCTCACTCCAGGGAAC
CCTCGGTGGGAGAACACACACCTGACCTACAGGATTGAAAATTACACACCAGATCTGTCA
AGAGAAGATGTGGACCGTGCCATTGAGAAAGCCTTTCAACTCTGGAGCAATGTCTCACCC
TTGACCTTCACCAAGGTCTCCGAGGGTCAAGCAGACATAATGATATCCTTTGTCAGGGGA
GATCATCGTGACAATTCTCCCTTTGATGGACCTGGAGGAAACCTTGCTCATGCTTTTCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61869218|ref|XP_612653.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61869218|ref|XP_612653.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               184-343, + strand, RNAz p=0.80081

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-343, + strand, RNAz p=0.80081

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               145-413, gnl|bosTau2|chr15 (1092989-1093257)
               

               
               145-413, gnl|Hg17|chr11 (102173444-102173176)
               

               
               145-413, gnl|Mm7|chr9 (7462987-7463251)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-413, gnl|bosTau2|chr15 (1092989-1093257)
               

               
               145-413, gnl|Hg17|chr11 (102173444-102173176)
               

               
               145-413, gnl|Mm7|chr9 (7462987-7463251)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	145-413, gnl\|bosTau2\|chr15 (1092989-1093257)
	145-413, gnl\|Hg17\|chr11 (102173444-102173176)
	145-413, gnl\|Mm7\|chr9 (7462987-7463251)

	jej (0.197844)
	duo (0.172801)
	nje (0.16592)
	nmm (0.132802)
	jca (0.11396)
	eje (0.0988338)