Non-Coding RNA Search

Ss1.1-Pey1-15D01.5

Sequence:


               
               CCTGACTTTGAGAGACTACGTACTTGACCTAGGTCACCCCTATTTGTGGGTGCAGAAGCT
GGGTGGTCTCCACTTCCCCAAAGAGCAGCCCCAGCACACTGTGGTCGCTGACCACTCGCT
GAGCGCCAGCCACATGGAGACCACCATGAAGCTGCTGAAGACCAGGGTGCAGTCCCGCCT
GGCCCTCCACAAGCAGTTTGCCTCCCTGGAACATGGCATCGTGCCAGTTACCAGTGATTG
CCAGTACCTCTTCCCTGCAAAGGTCGTCTCTCGCCTGGTGAAGTGGGTGGCAATTGCCCA
TGAGGATTACATGGAGCTGCATTTCACCAAAGACATTGTGGAGGCGGGACTGGCCGGGGA
CACCAATCTCTACTACATGGCACTCGTGGAAAGGGGCACAGGTAATTGCTCTGCTGATCA
CAGTGGTTCTAGGCAGGAGGAGCCGCTAAGAATAAAACGTTCCCAGGAGTTGCTCAAAGG
AAGGAAAGTTCCTGGAATCCTGCCTCAGGGACTCGGCTCAGTTGTGAGAGAGAGCACTCA
GTGAAGGCTTGCTCTGCAGCAGTCACATCCGCCTTATCTCATGTAATCCTCTGACAGCCC
AGGGCTGGTAATGTTCCCATCTTTGTCGCTGAGGAAAGTAAGGCCTAGTCACAAGCCCAG
TGTGACCTCTGAGCTTGAGCTCCTGTCTAGAATCAGATGCCTGTTCTTCCTCATCTTCAG
GGAAGGGCTGACACGTCACTCTTAGGTTGTGAAGTGCAGGACCCTGCTCCCTCTCTGCAA
TCTCTGCACTTATTCAGGAGAAATCCTCAAAATCTGTCCTGGGGAGTTCCAGTCATGGCC
CAGTAGCTAACAAACCCCACTAGTACCCAGGAGGATGTGGGTTCAATCCCTGGCCTCACT
CAGGGGGTTAAGGGTCCAGCGTTGCTGTGAGCTGTGGTGTAGGTCGCAGGCACAGCTGGG
ATCTGGCGTGGCTGTAGCTGTGGCATAGGCCGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGACTTTGAGAGACTACGTACTTGACCTAGGTCACCCCTATTTGTGGGTGCAGAAGCT
GGGTGGTCTCCACTTCCCCAAAGAGCAGCCCCAGCACACTGTGGTCGCTGACCACTCGCT
GAGCGCCAGCCACATGGAGACCACCATGAAGCTGCTGAAGACCAGGGTGCAGTCCCGCCT
GGCCCTCCACAAGCAGTTTGCCTCCCTGGAACATGGCATCGTGCCAGTTACCAGTGATTG
CCAGTACCTCTTCCCTGCAAAGGTCGTCTCTCGCCTGGTGAAGTGGGTGGCAATTGCCCA
TGAGGATTACATGGAGCTGCATTTCACCAAAGACATTGTGGAGGCGGGACTGGCCGGGGA
CACCAATCTCTACTACATGGCACTCGTGGAAAGGGGCACAGGTAATTGCTCTGCTGATCA
CAGTGGTTCTAGGCAGGAGGAGCCGCTAAGAATAAAACGTTCCCAGGAGTTGCTCAAAGG
AAGGAAAGTTCCTGGAATCCTGCCTCAGGGACTCGGCTCAGTTGTGAGAGAGAGCACTCA
GTGAAGGCTTGCTCTGCAGCAGTCACATCCGCCTTATCTCATGTAATCCTCTGACAGCCC
AGGGCTGGTAATGTTCCCATCTTTGTCGCTGAGGAAAGTAAGGCCTAGTCACAAGCCCAG
TGTGACCTCTGAGCTTGAGCTCCTGTCTAGAATCAGATGCCTGTTCTTCCTCATCTTCAG
GGAAGGGCTGACACGTCACTCTTAGGTTGTGAAGTGCAGGACCCTGCTCCCTCTCTGCAA
TCTCTGCACTTATTCAGGAGAAATCCTCAAAATCTGTCCTGGGGAGTTCCAGTCATGGCC
CAGTAGCTAACAAACCCCACTAGTACCCAGGAGGATGTGGGTTCAATCCCTGGCCTCACT
CAGGGGGTTAAGGGTCCAGCGTTGCTGTGAGCTGTGGTGTAGGTCGCAGGCACAGCTGGG
ATCTGGCGTGGCTGTAGCTGTGGCATAGGCCGGCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61825511|ref|XP_581129.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61825511|ref|XP_581129.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               86-209, gnl|bosTau2|chr17 (39465592-39465469)
               

               
               86-209, gnl|Hg17|chr22 (28239672-28239549)
               

               
               86-209, gnl|Mm7|chr11 (4872367-4872494)
               


               
               295-800, gnl|bosTau2|chr17 (39463828-39463322)
               

               
               295-800, gnl|Hg17|chr22 (28237680-28237136)
               

               
               295-800, gnl|Mm7|chr11 (4874130-4874620)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-209, gnl|bosTau2|chr17 (39465592-39465469)
               

               
               86-209, gnl|Hg17|chr22 (28239672-28239549)
               

               
               86-209, gnl|Mm7|chr11 (4872367-4872494)
               


               
               295-800, gnl|bosTau2|chr17 (39463828-39463322)
               

               
               295-800, gnl|Hg17|chr22 (28237680-28237136)
               

               
               295-800, gnl|Mm7|chr11 (4874130-4874620)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)
               

               
               nbm (0.0993246)

	86-209, gnl\|bosTau2\|chr17 (39465592-39465469)
	86-209, gnl\|Hg17\|chr22 (28239672-28239549)
	86-209, gnl\|Mm7\|chr11 (4872367-4872494)

	295-800, gnl\|bosTau2\|chr17 (39463828-39463322)
	295-800, gnl\|Hg17\|chr22 (28237680-28237136)
	295-800, gnl\|Mm7\|chr11 (4874130-4874620)