Ss1.1-Pey1-16A06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGCACAAAATGAACACAATGGTGAGCCCAGCAGCATTGATGGAAATTCTGGAGATGT AGACTGCTTTCAGCCAGCAGTCAAAAGGGCGAAGTTACAGGAGTCTATTGAATACGAAGA CTTGGGGAAAAATAATTCCATGAAAACAATTGCACTAAACCTCAAGAAGTCAGATAGGTA TTATCATGGTCCAACTCCAATCCAGTCGCTACAGTATGCAACAAGTCAGGATATTATTAA TTCTTTTCAAAGTATTAGACAAGAAATGGAAGCATATACACCCAGATTAACTCAGGTTCT CTCAAGTAGCGCTGCCAGTAGTACCATCACAGCACTGTCACCTGGAGGAGCACTTATGCA GGGGGGGACACAGCAAGCCATAAACCAGATGGTGCCGAATGATATTCAGTCCGAATTGAA ACACCTGTATGTGGCTGTTGGAGAGCTTCTCCGGCACTTCTGGTCCTGCTTTCCTGTTAA TACGCCATTCCTAGAAGAAAAGGTAGTGAAAATGAAAAGTAATTTGGAACGATTCCAAGT TACAAAGCTCTGCCCATTCCAAGAAAAAATCCGGAGACAGTATTTAAGCACAAATTTGGT AAGTCATATAGAAGAGATGCTCCAGACAGCCTACAACAAGCTCCATACATGGCAGTCACG GCGTCTAATGAAGAAAACGTGAAGTGTCTATGGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGCACAAAATGAACACAATGGTGAGCCCAGCAGCATTGATGGAAATTCTGGAGATGT AGACTGCTTTCAGCCAGCAGTCAAAAGGGCGAAGTTACAGGAGTCTATTGAATACGAAGA CTTGGGGAAAAATAATTCCATGAAAACAATTGCACTAAACCTCAAGAAGTCAGATAGGTA TTATCATGGTCCAACTCCAATCCAGTCGCTACAGTATGCAACAAGTCAGGATATTATTAA TTCTTTTCAAAGTATTAGACAAGAAATGGAAGCATATACACCCAGATTAACTCAGGTTCT CTCAAGTAGCGCTGCCAGTAGTACCATCACAGCACTGTCACCTGGAGGAGCACTTATGCA GGGGGGGACACAGCAAGCCATAAACCAGATGGTGCCGAATGATATTCAGTCCGAATTGAA ACACCTGTATGTGGCTGTTGGAGAGCTTCTCCGGCACTTCTGGTCCTGCTTTCCTGTTAA TACGCCATTCCTAGAAGAAAAGGTAGTGAAAATGAAAAGTAATTTGGAACGATTCCAAGT TACAAAGCTCTGCCCATTCCAAGAAAAAATCCGGAGACAGTATTTAAGCACAAATTTGGT AAGTCATATAGAAGAGATGCTCCAGACAGCCTACAACAAGCTCCATACATGGCAGTCACG GCGTCTAATGAAGAAAACGTGAAGTGTCTATGGCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 176-297, gnl|bosTau2|chr29 (18466290-18466169) | |
| 176-297, gnl|canFam2|chr21 (43986834-43986949) | |
| 176-297, gnl|danRer3|chr24 (13529533-13529648) | |
| 176-297, gnl|dasNov1|scaffold_3006 (48917-48813) | |
| 176-297, gnl|echTel1|scaffold_282349 (138171-138286) | |
| 176-297, gnl|fr1|chrUn (153229075-153229189) | |
| 176-297, gnl|galGal2|chr5 (10090884-10090999) | |
| 176-297, gnl|hg17|chr11 (18330451-18330566) | |
| 176-297, gnl|Hg17|chr11 (18330450-18330571) | |
| 176-297, gnl|loxAfr1|scaffold_1205 (44642-44527) | |
| 176-297, gnl|mm7|chr7 (42991500-42991615) | |
| 176-297, gnl|Mm7|chr7 (42991499-42991620) | |
| 176-297, gnl|monDom2|scaffold_10 (53172479-53172364) | |
| 176-297, gnl|oryCun1|scaffold_194838 (57254-57139) | |
| 176-297, gnl|panTro1|chr9 (18563008-18563123) | |
| 176-297, gnl|rheMac2|chr14 (53546428-53546313) | |
| 176-297, gnl|rn3|chr1 (97450930-97451045) | |
| 176-297, gnl|tetNig1|chr13 (10998939-10998832) | |
| 176-297, gnl|xenTro1|scaffold_1818 (41064-40949) | |
| 387-504, gnl|bosTau2|chr29 (18461667-18461550) | |
| 387-504, gnl|canFam2|chr21 (43990868-43990982) | |
| 387-504, gnl|canFam2|chr21 (43990854-43990990) | |
| 387-504, gnl|danRer3|chr24 (13536073-13536269) | |
| 387-504, gnl|danRer3|chr24 (13536053-13536195) | |
| 387-504, gnl|dasNov1|scaffold_141635 (3072-2955) | |
| 387-504, gnl|dasNov1|scaffold_3006 (48719-48601) | |
| 387-504, gnl|echTel1|scaffold_206600 (1200-1086) | |
| 387-504, gnl|echTel1|scaffold_282349 (140234-140372) | |
| 387-504, gnl|fr1|chrUn (153229469-153229659) | |
| 387-504, gnl|fr1|chrUn (153229466-153229591) | |
| 387-504, gnl|galGal2|chr5 (10093231-10093345) | |
| 387-504, gnl|galGal2|chr5 (10093212-10093354) | |
| 387-504, gnl|hg17|chr11 (18336630-18336772) | |
| 387-504, gnl|Hg17|chr11 (18336648-18336765) | |
| 387-504, gnl|hg17|chr18 (56016104-56016218) | |
| 387-504, gnl|mm7|chr7 (42993099-42993213) | |
| 387-504, gnl|mm7|chr7 (42993080-42993222) | |
| 387-504, gnl|Mm7|chr7 (42993098-42993215) | |
| 387-504, gnl|monDom2|scaffold_10 (53170791-53170677) | |
| 387-504, gnl|monDom2|scaffold_10 (53170810-53170668) | |
| 387-504, gnl|oryCun1|scaffold_174302 (51432-51546) | |
| 387-504, gnl|oryCun1|scaffold_194838 (57043-56930) | |
| 387-504, gnl|panTro1|chr17 (52898215-52898329) | |
| 387-504, gnl|panTro1|chr9 (18569098-18569240) | |
| 387-504, gnl|rheMac2|chr14 (53540657-53540515) | |
| 387-504, gnl|rheMac2|chr18 (53464833-53464930) | |
| 387-504, gnl|rn3|chr1 (97452522-97452636) | |
| 387-504, gnl|rn3|chr1 (97452503-97452645) | |
| 387-504, gnl|tetNig1|chr13 (10998515-10998324) | |
| 387-504, gnl|tetNig1|chr13 (10998518-10998395) | |
| 387-504, gnl|xenTro1|scaffold_1818 (40474-40360) | |
| 387-504, gnl|xenTro1|scaffold_1818 (40490-40351) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 176-297, gnl|bosTau2|chr29 (18466290-18466169) | |
| 176-297, gnl|canFam2|chr21 (43986834-43986949) | |
| 176-297, gnl|danRer3|chr24 (13529533-13529648) | |
| 176-297, gnl|dasNov1|scaffold_3006 (48917-48813) | |
| 176-297, gnl|echTel1|scaffold_282349 (138171-138286) | |
| 176-297, gnl|fr1|chrUn (153229075-153229189) | |
| 176-297, gnl|galGal2|chr5 (10090884-10090999) | |
| 176-297, gnl|hg17|chr11 (18330451-18330566) | |
| 176-297, gnl|Hg17|chr11 (18330450-18330571) | |
| 176-297, gnl|loxAfr1|scaffold_1205 (44642-44527) | |
| 176-297, gnl|mm7|chr7 (42991500-42991615) | |
| 176-297, gnl|Mm7|chr7 (42991499-42991620) | |
| 176-297, gnl|monDom2|scaffold_10 (53172479-53172364) | |
| 176-297, gnl|oryCun1|scaffold_194838 (57254-57139) | |
| 176-297, gnl|panTro1|chr9 (18563008-18563123) | |
| 176-297, gnl|rheMac2|chr14 (53546428-53546313) | |
| 176-297, gnl|rn3|chr1 (97450930-97451045) | |
| 176-297, gnl|tetNig1|chr13 (10998939-10998832) | |
| 176-297, gnl|xenTro1|scaffold_1818 (41064-40949) | |
| 387-504, gnl|bosTau2|chr29 (18461667-18461550) | |
| 387-504, gnl|canFam2|chr21 (43990868-43990982) | |
| 387-504, gnl|canFam2|chr21 (43990854-43990990) | |
| 387-504, gnl|danRer3|chr24 (13536073-13536269) | |
| 387-504, gnl|danRer3|chr24 (13536053-13536195) | |
| 387-504, gnl|dasNov1|scaffold_141635 (3072-2955) | |
| 387-504, gnl|dasNov1|scaffold_3006 (48719-48601) | |
| 387-504, gnl|echTel1|scaffold_206600 (1200-1086) | |
| 387-504, gnl|echTel1|scaffold_282349 (140234-140372) | |
| 387-504, gnl|fr1|chrUn (153229469-153229659) | |
| 387-504, gnl|fr1|chrUn (153229466-153229591) | |
| 387-504, gnl|galGal2|chr5 (10093231-10093345) | |
| 387-504, gnl|galGal2|chr5 (10093212-10093354) | |
| 387-504, gnl|hg17|chr11 (18336630-18336772) | |
| 387-504, gnl|Hg17|chr11 (18336648-18336765) | |
| 387-504, gnl|hg17|chr18 (56016104-56016218) | |
| 387-504, gnl|mm7|chr7 (42993099-42993213) | |
| 387-504, gnl|mm7|chr7 (42993080-42993222) | |
| 387-504, gnl|Mm7|chr7 (42993098-42993215) | |
| 387-504, gnl|monDom2|scaffold_10 (53170791-53170677) | |
| 387-504, gnl|monDom2|scaffold_10 (53170810-53170668) | |
| 387-504, gnl|oryCun1|scaffold_174302 (51432-51546) | |
| 387-504, gnl|oryCun1|scaffold_194838 (57043-56930) | |
| 387-504, gnl|panTro1|chr17 (52898215-52898329) | |
| 387-504, gnl|panTro1|chr9 (18569098-18569240) | |
| 387-504, gnl|rheMac2|chr14 (53540657-53540515) | |
| 387-504, gnl|rheMac2|chr18 (53464833-53464930) | |
| 387-504, gnl|rn3|chr1 (97452522-97452636) | |
| 387-504, gnl|rn3|chr1 (97452503-97452645) | |
| 387-504, gnl|tetNig1|chr13 (10998515-10998324) | |
| 387-504, gnl|tetNig1|chr13 (10998518-10998395) | |
| 387-504, gnl|xenTro1|scaffold_1818 (40474-40360) | |
| 387-504, gnl|xenTro1|scaffold_1818 (40490-40351) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| sin (0.349895) | |
| lun (0.150489) | |
| sug (0.127291) | |
| cbl (0.114797) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.349895) | |
| lun (0.150489) | |
| sug (0.127291) | |
| cbl (0.114797) |