Non-Coding RNA Search

Ss1.1-Pey1-16H09.5

Sequence:


               
               CTGCTAGAGGGCTATGCCCGGTACTCTGTGAGTGTGTTCCAGCCACCCTTCCAGCCTGGC
CGCATGGCCTTGGAGTCCCAGGGCCCTGGCTGCACCACAATGCTGTCCACTAGCTCCCTG
GAGGCTGGGGACAGTGAGAGGGACCCTGTTCAGCCTCCTGAACTTCAGTTGGTGACCCCT
GTGGCTGAAGGGGATACAGGGGTCCCCCGGGCATGGGCATCCCCTGATCGGGGCCCTGCA
CCCAGTACCAGTGGAGTTTCTTCTGAGATGCTGGCCAGTGTGTCTGCTGAAGTTGGCTCC
TTGCCTGCTGGTGAGAGGGTGTCCCGGCCTGAAGCTGCCGTGCCCGGATACCAACACCCA
AGTGAAGCCATGAATGCCCACACACCCCAGTTCTTTATCTATAAAATTGACGCATCCAAC
CGAGAACAGCGGCTAGAGGACAAAGGCGATAACCCCCTAGAGCTGGGTGAGGATTGCAGT
CTGGCTCTAGTCTGGCGGAACAACGAGCGCCTGCAGGAGTTCGTGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTAGAGGGCTATGCCCGGTACTCTGTGAGTGTGTTCCAGCCACCCTTCCAGCCTGGC
CGCATGGCCTTGGAGTCCCAGGGCCCTGGCTGCACCACAATGCTGTCCACTAGCTCCCTG
GAGGCTGGGGACAGTGAGAGGGACCCTGTTCAGCCTCCTGAACTTCAGTTGGTGACCCCT
GTGGCTGAAGGGGATACAGGGGTCCCCCGGGCATGGGCATCCCCTGATCGGGGCCCTGCA
CCCAGTACCAGTGGAGTTTCTTCTGAGATGCTGGCCAGTGTGTCTGCTGAAGTTGGCTCC
TTGCCTGCTGGTGAGAGGGTGTCCCGGCCTGAAGCTGCCGTGCCCGGATACCAACACCCA
AGTGAAGCCATGAATGCCCACACACCCCAGTTCTTTATCTATAAAATTGACGCATCCAAC
CGAGAACAGCGGCTAGAGGACAAAGGCGATAACCCCCTAGAGCTGGGTGAGGATTGCAGT
CTGGCTCTAGTCTGGCGGAACAACGAGCGCCTGCAGGAGTTCGTGTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               55-294, + strand, RNAz p=0.90183

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               55-294, + strand, RNAz p=0.90183

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-334, gnl|bosTau2|chr22 (40080729-40080411)
               

               
               16-334, gnl|Hg17|chr3 (49124255-49123937)
               

               
               16-334, gnl|Mm7|chr9 (108210913-108211231)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-334, gnl|bosTau2|chr22 (40080729-40080411)
               

               
               16-334, gnl|Hg17|chr3 (49124255-49123937)
               

               
               16-334, gnl|Mm7|chr9 (108210913-108211231)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)
               

               
               cty (0.10408)

	16-334, gnl\|bosTau2\|chr22 (40080729-40080411)
	16-334, gnl\|Hg17\|chr3 (49124255-49123937)
	16-334, gnl\|Mm7\|chr9 (108210913-108211231)