Non-Coding RNA Search

Ss1.1-Pey1-17B06.5

Sequence:


               
               AGGCCACCCGTCGCGGGCGGAGGACGTGGGGGGGGGGAGGGCTTGAGGCACTCACCGCCT
CCTGGTCCCTTCCTAAAGAAGCCACTCGGCCTCTGCGGGGCGCTCGGCGACTTCAGCTGG
CCGCGCTGGCCATTGGAGTGTGCGGCTGAGGAGGGAGTAAGTTGAGAGCGCAGCGCAGTC
AGTCCCGGGCAGCAGCTGCAAGATGCCGAGCGCGCAGTCCAGACCCGAAGCTCCGCGAAC
GCAGCTTCGTCCCGCCTGAGCCAGGCTGCAGTTTCCGAGGCCCTCTCCAGCCAAGGAAAA
GCTACACACAAAGCCTGGATCGTTCTCCCCGAGCCACCCCCGGCTGCAAGGGAAGGCTCA
CCCCGCCCCGCCCTCTAGCGTTCGTCTGGAGAAGCGCCACCCCGGGTTCCTGGGGACAGC
GCGCATCATGGGGTCCACCAGCATCCCGCTGGTCAAGGCCCTCCGCAGCTCTGTCTCCGA
CTATGTCAACTACGATATCATCGTCCGGCATTACAACTACACGGGAAAGCTGAATGTCAG
CGCAGACAAGGAAAATGGCATTAAACTGCTCTCCGTGGTGTTCATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCCACCCGTCGCGGGCGGAGGACGTGGGGGGGGGGAGGGCTTGAGGCACTCACCGCCT
CCTGGTCCCTTCCTAAAGAAGCCACTCGGCCTCTGCGGGGCGCTCGGCGACTTCAGCTGG
CCGCGCTGGCCATTGGAGTGTGCGGCTGAGGAGGGAGTAAGTTGAGAGCGCAGCGCAGTC
AGTCCCGGGCAGCAGCTGCAAGATGCCGAGCGCGCAGTCCAGACCCGAAGCTCCGCGAAC
GCAGCTTCGTCCCGCCTGAGCCAGGCTGCAGTTTCCGAGGCCCTCTCCAGCCAAGGAAAA
GCTACACACAAAGCCTGGATCGTTCTCCCCGAGCCACCCCCGGCTGCAAGGGAAGGCTCA
CCCCGCCCCGCCCTCTAGCGTTCGTCTGGAGAAGCGCCACCCCGGGTTCCTGGGGACAGC
GCGCATCATGGGGTCCACCAGCATCCCGCTGGTCAAGGCCCTCCGCAGCTCTGTCTCCGA
CTATGTCAACTACGATATCATCGTCCGGCATTACAACTACACGGGAAAGCTGAATGTCAG
CGCAGACAAGGAAAATGGCATTAAACTGCTCTCCGTGGTGTTCATTCT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               263-588, gnl|bosTau2|chr3 (34156177-34156505)
               

               
               263-588, gnl|Hg17|chr1 (101416397-101416722)
               

               
               263-588, gnl|Mm7|chr3 (115488029-115487696)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               263-588, gnl|bosTau2|chr3 (34156177-34156505)
               

               
               263-588, gnl|Hg17|chr1 (101416397-101416722)
               

               
               263-588, gnl|Mm7|chr3 (115488029-115487696)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               clu (0.239292)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

	263-588, gnl\|bosTau2\|chr3 (34156177-34156505)
	263-588, gnl\|Hg17\|chr1 (101416397-101416722)
	263-588, gnl\|Mm7\|chr3 (115488029-115487696)