Ss1.1-Pey1-17E02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACAGCGGAGGTGGTGGTGGCCCTCGTCTGTGGCTCCCGTTCTACTTGCGCTGGACCTC ACAGCTATGGAGGGACCCCAGGAGCTTCTGAGTGGGAAGCTCCGGCTCTGCTTCACCCCT GCTGCCCGGACCAGCCTCCTGCTGCTCAGACTCAACGACGCTGTGCTGCGAGCGTTGCAG GAGTGTCAGCGGCAACAGGTTCGTCCAGTGATTGCTTTCCAGGGCAGCCGAGGGTATCTG AGGCTCCCAGGCCCTGGCTGGTCCTGCCTCTTTTCCTTCACAGTGTCTCAGTGTAACCAG GAGGGTCCTGGTGGTGGCTTGGACCTTGTGTGCCAACGCTTAGTCAGATCTGGGCCTAGC CGCCTCCACTGCCTGGGTTCACTCAGGGAGCGTCTCACTATTTGGGCAGCCATGGATTCT ATCTCAGCTCCATCTTCAGTTCGGAGACACAACCTGACTGAAGATGCCAGAGATCATGAG AGCTGGCGGAATGTGGAAGACTATTCTGGAGGAGACACAGTTTCAGAGCCACAGATGGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACAGCGGAGGTGGTGGTGGCCCTCGTCTGTGGCTCCCGTTCTACTTGCGCTGGACCTC ACAGCTATGGAGGGACCCCAGGAGCTTCTGAGTGGGAAGCTCCGGCTCTGCTTCACCCCT GCTGCCCGGACCAGCCTCCTGCTGCTCAGACTCAACGACGCTGTGCTGCGAGCGTTGCAG GAGTGTCAGCGGCAACAGGTTCGTCCAGTGATTGCTTTCCAGGGCAGCCGAGGGTATCTG AGGCTCCCAGGCCCTGGCTGGTCCTGCCTCTTTTCCTTCACAGTGTCTCAGTGTAACCAG GAGGGTCCTGGTGGTGGCTTGGACCTTGTGTGCCAACGCTTAGTCAGATCTGGGCCTAGC CGCCTCCACTGCCTGGGTTCACTCAGGGAGCGTCTCACTATTTGGGCAGCCATGGATTCT ATCTCAGCTCCATCTTCAGTTCGGAGACACAACCTGACTGAAGATGCCAGAGATCATGAG AGCTGGCGGAATGTGGAAGACTATTCTGGAGGAGACACAGTTTCAGAGCCACAGATGGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 382-495, - strand, RNAz p=0.655089 | |
| 422-538, - strand, RNAz p=0.957537 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 382-495, - strand, RNAz p=0.655089 | |
| 422-538, - strand, RNAz p=0.957537 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-208, gnl|bosTau2|chr21 (34504158-34503950) | |
| 1-208, gnl|canFam2|chr30 (13509912-13510280) | |
| 1-208, gnl|hg17|chr15 (41856030-41856392) | |
| 1-208, gnl|Hg17|chr15 (41856460-41856253) | |
| 1-208, gnl|loxAfr1|scaffold_62102 (10860-11223) | |
| 1-208, gnl|mm7|chr2 (121183026-121183377) | |
| 1-208, gnl|Mm7|chr2 (121183436-121183235) | |
| 1-208, gnl|monDom2|scaffold_53 (10292154-10291714) | |
| 1-208, gnl|oryCun1|scaffold_175340 (38245-38621) | |
| 1-208, gnl|panTro1|chr16 (41765019-41765381) | |
| 1-208, gnl|rheMac2|chr7 (22166407-22166769) | |
| 1-208, gnl|rn3|chr3 (108145646-108145999) | |
| 345-538, gnl|bosTau2|chr21 (34503104-34502911) | |
| 345-538, gnl|canFam2|chr30 (13508720-13509556) | |
| 345-538, gnl|dasNov1|scaffold_106252 (169-1006) | |
| 345-538, gnl|echTel1|scaffold_205299 (3111-2261) | |
| 345-538, gnl|hg17|chr15 (41854772-41855655) | |
| 345-538, gnl|Hg17|chr15 (41855416-41855223) | |
| 345-538, gnl|loxAfr1|scaffold_62102 (9662-10491) | |
| 345-538, gnl|mm7|chr2 (121181934-121182682) | |
| 345-538, gnl|Mm7|chr2 (121182465-121182287) | |
| 345-538, gnl|monDom2|scaffold_53 (10293436-10292604) | |
| 345-538, gnl|oryCun1|scaffold_175340 (37058-37880) | |
| 345-538, gnl|panTro1|chr16 (41763758-41764644) | |
| 345-538, gnl|rheMac2|chr7 (22165153-22166035) | |
| 345-538, gnl|rn3|chr3 (108144532-108145303) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-208, gnl|bosTau2|chr21 (34504158-34503950) | |
| 1-208, gnl|canFam2|chr30 (13509912-13510280) | |
| 1-208, gnl|hg17|chr15 (41856030-41856392) | |
| 1-208, gnl|Hg17|chr15 (41856460-41856253) | |
| 1-208, gnl|loxAfr1|scaffold_62102 (10860-11223) | |
| 1-208, gnl|mm7|chr2 (121183026-121183377) | |
| 1-208, gnl|Mm7|chr2 (121183436-121183235) | |
| 1-208, gnl|monDom2|scaffold_53 (10292154-10291714) | |
| 1-208, gnl|oryCun1|scaffold_175340 (38245-38621) | |
| 1-208, gnl|panTro1|chr16 (41765019-41765381) | |
| 1-208, gnl|rheMac2|chr7 (22166407-22166769) | |
| 1-208, gnl|rn3|chr3 (108145646-108145999) | |
| 345-538, gnl|bosTau2|chr21 (34503104-34502911) | |
| 345-538, gnl|canFam2|chr30 (13508720-13509556) | |
| 345-538, gnl|dasNov1|scaffold_106252 (169-1006) | |
| 345-538, gnl|echTel1|scaffold_205299 (3111-2261) | |
| 345-538, gnl|hg17|chr15 (41854772-41855655) | |
| 345-538, gnl|Hg17|chr15 (41855416-41855223) | |
| 345-538, gnl|loxAfr1|scaffold_62102 (9662-10491) | |
| 345-538, gnl|mm7|chr2 (121181934-121182682) | |
| 345-538, gnl|Mm7|chr2 (121182465-121182287) | |
| 345-538, gnl|monDom2|scaffold_53 (10293436-10292604) | |
| 345-538, gnl|oryCun1|scaffold_175340 (37058-37880) | |
| 345-538, gnl|panTro1|chr16 (41763758-41764644) | |
| 345-538, gnl|rheMac2|chr7 (22165153-22166035) | |
| 345-538, gnl|rn3|chr3 (108144532-108145303) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| lnt (0.142308) |