Non-Coding RNA Search

Ss1.1-Pey1-17E05.5

Sequence:


               
               ATAGGATCAGTTCTGGCCATTTCTTAACCTGTGCTGATATTTTAAAAATGTATTTTCTAT
TTATAAGATTCTAGTTGCTCTGTAAAATAAAGATTGTTCCCCTCTGGTATTATCTATTGT
AACTATCTCTCTTTATCCATGGAAACTCTTGTCTTCAGGTTGATTTCCTTTCTTCCAGGA
GGTCTATTGCATTAAATAACAACTAGTGCTCAATAAATACACCAAAGGGAGATTAGGAAT
TAGTAAGAGAAAAGAAAGGGAAATGTCTTAATTTTATGCCTTTATTTCTCGGAGTTTCCT
TATGCTTCTGGAGACTTGGAGCCTAAGCAGACTCTCAATATTTTGATAATAGAATTAAAT
ACTGAAATCAACAGCTGGGGTTGACCATACTCACATTAACCGAAATCAAGGAAGGAGGAA
TATCTGTAATAAATGTCATTATTAGTGTAGCAGCTGATTCTTGAGTTGAGCTGTGAAGAT
CAAGTTGATGATAGTGTGAACACTTAGGTATTTTGTCATTTATGAAATTTAAAATGTAAT
AGTTTGATCGTTGAGGCAGTTTGTCATTCATGAAATTCAAAATTAAATAGTTTGATCCTT
TGGGCAGTTTTTTTTTATCATTTGTGACCTTTAAGGAACTCTTCACATCTTCTTGTCCAA
CCTCCTCATTTTATATGCAACTTAATTTTGTTTATTTCTTGTAAACCTACTGTGTGCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGGATCAGTTCTGGCCATTTCTTAACCTGTGCTGATATTTTAAAAATGTATTTTCTAT
TTATAAGATTCTAGTTGCTCTGTAAAATAAAGATTGTTCCCCTCTGGTATTATCTATTGT
AACTATCTCTCTTTATCCATGGAAACTCTTGTCTTCAGGTTGATTTCCTTTCTTCCAGGA
GGTCTATTGCATTAAATAACAACTAGTGCTCAATAAATACACCAAAGGGAGATTAGGAAT
TAGTAAGAGAAAAGAAAGGGAAATGTCTTAATTTTATGCCTTTATTTCTCGGAGTTTCCT
TATGCTTCTGGAGACTTGGAGCCTAAGCAGACTCTCAATATTTTGATAATAGAATTAAAT
ACTGAAATCAACAGCTGGGGTTGACCATACTCACATTAACCGAAATCAAGGAAGGAGGAA
TATCTGTAATAAATGTCATTATTAGTGTAGCAGCTGATTCTTGAGTTGAGCTGTGAAGAT
CAAGTTGATGATAGTGTGAACACTTAGGTATTTTGTCATTTATGAAATTTAAAATGTAAT
AGTTTGATCGTTGAGGCAGTTTGTCATTCATGAAATTCAAAATTAAATAGTTTGATCCTT
TGGGCAGTTTTTTTTTATCATTTGTGACCTTTAAGGAACTCTTCACATCTTCTTGTCCAA
CCTCCTCATTTTATATGCAACTTAATTTTGTTTATTTCTTGTAAACCTACTGTGTGCACA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-715, gnl|bosTau2|chr23 (35488337-35489065)
               

               
               7-715, gnl|Hg17|chr6 (16844775-16844168)
               

               
               7-715, gnl|Mm7|chr13 (45387610-45386826)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-715, gnl|bosTau2|chr23 (35488337-35489065)
               

               
               7-715, gnl|Hg17|chr6 (16844775-16844168)
               

               
               7-715, gnl|Mm7|chr13 (45387610-45386826)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	7-715, gnl\|bosTau2\|chr23 (35488337-35489065)
	7-715, gnl\|Hg17\|chr6 (16844775-16844168)
	7-715, gnl\|Mm7\|chr13 (45387610-45386826)

	lyg (0.266205)
	ova (0.258264)
	aor (0.195274)
	rec (0.17307)
	lin (0.145603)
	tra (0.123092)
	cbl (0.114797)
	ldo (0.0970026)