Non-Coding RNA Search

Ss1.1-Pey1-18F01.5

Sequence:


               
               CATCTGGGACTTCATCTTCTACCCCAACGGGGTGATGGAGGCGAAGATGCACGCCACTGG
CTACGTCCACGCCACCTTCTACACCCCTGAGGGCCTGCGCTATGGGACACGCCTGCACAC
ACACTTGATCGGCAACATGCACACGCACCTGGTGAATTACCGCGTCGACCTGGACGTGGC
AGGCACCACAAATAGCTTCCAGACCCTGCAGATGGAGCTAGAAAACATCACCAACCCCTG
GAGCCCGAGACACCGCCTGGTGCAGCCCACACTCAAGCAGACCAGGTACTCCCGCGAGCG
CCAGGCGGCCTTCCGCTTCGGACAGCCTCTGCCCAAGTACCTGCTCATTACCAGCCCCAA
GGAGAACCCGTGGGGCCACACGCGCAGCTACCGCCTGCAGCTCCACTCCATGGCCGACCA
AGTGCTGCCCCCAGGCTGGCAGGAGGAGCGGGCTGTCACCTGGGCCAGGTACCCCCTGGC
CGTGACCAGATACCGGGAATCTGAGCTCTCCAGCAGCAGCATCTACAACCAGAACGACCC
CTGGGACCCACCCGTGGTCTTTGAGGAGTTTCTTCGAAACAATGAAAACATTGAAGATGA
GGACCTGGTGGCCTGGGTCACAGTGGGCTTCCTGCACATCCCCCACTCAGAAGACATCCC
CAACACGGCCACACCCGGGAACTCTGTGGGCTTCCTGCTCCGGCCCTTCAACTTCTTTCC
AGAGGACCCAGCCCTGGCGTCCAGAGACCTCGTGGTCGTGTGGCCTCTGGAAAATGGCTC
CACCTACGCCCAGCGCTGGATCCCCGAGGAGGACCAGAGCTGCCTGAAGCCGCCCCCTTT
TAGCTACAATGGATCCTACAGGCCTGTGTGAAGGCCTCCGGCCCCCCCGCCACTAACTCC
TACCTGAAGCCCGAGGTTCCCCCACACACACCCAGGAACAGACAGGAAAGCCCTTAGGGC
CCAGTCCTGTGCTGCCTCCGGGCAGGGAGGCACAGCGGGCGAGGCCACCCACCAGGCCAG
GCGCGCAGGACACACACAGATGAGAAACACAGACCTCGCCCTGGCTTCCCCTCTCCTTGG
ACTGGCCCAGAAGACCTCCCTCCCTAAGGAAAAATGACACTCACGGACACTAGGGCGACC
TGTCGCAGCGGCTTAAAGCATCAGAGATGGCAATTCCCTCTCGGGGGCCGGAGGGGTTCG
GCTGGGTCGCTGAGAGGCAGGCAAAGCAGGGCAACCACAGGAAGACGCTAGGGAACAATC
TAGAGAAATTGCCAACACCTGTACCCTTTGACACCCTGGTCCAGCTTCTAGGGGTTTCTC
CTGGAGACCTCCCTCCAAACACAGGAAATGAATTCACAGAAAATCACTGCCGTGTGGTTT
GTACGAGTAAAGTCTGGAAACCACCCAAATGTCCCGTCCACAGGAGAGACTGCAGAGGTC
TGGACACACCAGGACGTGTCCACACAATGCAAATTCGAGGTGACTGCAAAAGAAAGGTTT
GCACGGGGACCTTCTCTGTACAGATGGGGAGAGCGCCAGGATATACCAAGAAAATAGGTT
TAGAACAATATATGCATATAGCGTGCGTATCTTTGTGTAAGAAAGCAGAGGAATGTATGT
ATTCATAACAACCCTGGAAAGATACACGAGACACTAATAAAAACAGTTAAACAGTTAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCTGGGACTTCATCTTCTACCCCAACGGGGTGATGGAGGCGAAGATGCACGCCACTGG
CTACGTCCACGCCACCTTCTACACCCCTGAGGGCCTGCGCTATGGGACACGCCTGCACAC
ACACTTGATCGGCAACATGCACACGCACCTGGTGAATTACCGCGTCGACCTGGACGTGGC
AGGCACCACAAATAGCTTCCAGACCCTGCAGATGGAGCTAGAAAACATCACCAACCCCTG
GAGCCCGAGACACCGCCTGGTGCAGCCCACACTCAAGCAGACCAGGTACTCCCGCGAGCG
CCAGGCGGCCTTCCGCTTCGGACAGCCTCTGCCCAAGTACCTGCTCATTACCAGCCCCAA
GGAGAACCCGTGGGGCCACACGCGCAGCTACCGCCTGCAGCTCCACTCCATGGCCGACCA
AGTGCTGCCCCCAGGCTGGCAGGAGGAGCGGGCTGTCACCTGGGCCAGGTACCCCCTGGC
CGTGACCAGATACCGGGAATCTGAGCTCTCCAGCAGCAGCATCTACAACCAGAACGACCC
CTGGGACCCACCCGTGGTCTTTGAGGAGTTTCTTCGAAACAATGAAAACATTGAAGATGA
GGACCTGGTGGCCTGGGTCACAGTGGGCTTCCTGCACATCCCCCACTCAGAAGACATCCC
CAACACGGCCACACCCGGGAACTCTGTGGGCTTCCTGCTCCGGCCCTTCAACTTCTTTCC
AGAGGACCCAGCCCTGGCGTCCAGAGACCTCGTGGTCGTGTGGCCTCTGGAAAATGGCTC
CACCTACGCCCAGCGCTGGATCCCCGAGGAGGACCAGAGCTGCCTGAAGCCGCCCCCTTT
TAGCTACAATGGATCCTACAGGCCTGTGTGAAGGCCTCCGGCCCCCCCGCCACTAACTCC
TACCTGAAGCCCGAGGTTCCCCCACACACACCCAGGAACAGACAGGAAAGCCCTTAGGGC
CCAGTCCTGTGCTGCCTCCGGGCAGGGAGGCACAGCGGGCGAGGCCACCCACCAGGCCAG
GCGCGCAGGACACACACAGATGAGAAACACAGACCTCGCCCTGGCTTCCCCTCTCCTTGG
ACTGGCCCAGAAGACCTCCCTCCCTAAGGAAAAATGACACTCACGGACACTAGGGCGACC
TGTCGCAGCGGCTTAAAGCATCAGAGATGGCAATTCCCTCTCGGGGGCCGGAGGGGTTCG
GCTGGGTCGCTGAGAGGCAGGCAAAGCAGGGCAACCACAGGAAGACGCTAGGGAACAATC
TAGAGAAATTGCCAACACCTGTACCCTTTGACACCCTGGTCCAGCTTCTAGGGGTTTCTC
CTGGAGACCTCCCTCCAAACACAGGAAATGAATTCACAGAAAATCACTGCCGTGTGGTTT
GTACGAGTAAAGTCTGGAAACCACCCAAATGTCCCGTCCACAGGAGAGACTGCAGAGGTC
TGGACACACCAGGACGTGTCCACACAATGCAAATTCGAGGTGACTGCAAAAGAAAGGTTT
GCACGGGGACCTTCTCTGTACAGATGGGGAGAGCGCCAGGATATACCAAGAAAATAGGTT
TAGAACAATATATGCATATAGCGTGCGTATCTTTGTGTAAGAAAGCAGAGGAATGTATGT
ATTCATAACAACCCTGGAAAGATACACGAGACACTAATAAAAACAGTTAAACAGTTAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10442000|gb|AAG17277.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10442000|gb|AAG17277.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               258-457, - strand, RNAz p=0.912854
               

               
               680-879, - strand, RNAz p=0.997463

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               258-457, - strand, RNAz p=0.912854
               

               
               680-879, - strand, RNAz p=0.997463

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               179-470, gnl|bosTau2|chr4 (64709148-64708857)
               

               
               179-470, gnl|Hg17|chr7 (149993495-149993786)
               

               
               179-470, gnl|Mm7|chr6 (48867656-48867947)
               


               
               600-1662, gnl|bosTau2|chr4 (64707939-64706927)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-470, gnl|bosTau2|chr4 (64709148-64708857)
               

               
               179-470, gnl|Hg17|chr7 (149993495-149993786)
               

               
               179-470, gnl|Mm7|chr6 (48867656-48867947)
               


               
               600-1662, gnl|bosTau2|chr4 (64707939-64706927)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               jej (1.58275)
               

               
               duo (1.20961)
               

               
               nje (0.99552)
               

               
               ill (0.877963)
               

               
               sin (0.874738)
               

               
               cje (0.826173)
               

               
               cki (0.826173)
               

               
               nco (0.646935)
               

               
               col (0.390016)
               

               
               kid (0.389206)
               

               
               sto (0.359648)
               

               
               sme (0.305437)
               

               
               eje (0.197668)
               

               
               rec (0.17307)
               

               
               cty (0.10408)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (1.58275)
               

               
               duo (1.20961)
               

               
               nje (0.99552)
               

               
               ill (0.877963)
               

               
               sin (0.874738)
               

               
               cje (0.826173)
               

               
               cki (0.826173)
               

               
               nco (0.646935)
               

               
               col (0.390016)
               

               
               kid (0.389206)
               

               
               sto (0.359648)
               

               
               sme (0.305437)
               

               
               eje (0.197668)
               

               
               rec (0.17307)
               

               
               cty (0.10408)

	258-457, - strand, RNAz p=0.912854
	680-879, - strand, RNAz p=0.997463

	179-470, gnl\|bosTau2\|chr4 (64709148-64708857)
	179-470, gnl\|Hg17\|chr7 (149993495-149993786)
	179-470, gnl\|Mm7\|chr6 (48867656-48867947)

	600-1662, gnl\|bosTau2\|chr4 (64707939-64706927)

	jej (1.58275)
	duo (1.20961)
	nje (0.99552)
	ill (0.877963)
	sin (0.874738)
	cje (0.826173)
	cki (0.826173)
	nco (0.646935)
	col (0.390016)
	kid (0.389206)
	sto (0.359648)
	sme (0.305437)
	eje (0.197668)
	rec (0.17307)
	cty (0.10408)