Non-Coding RNA Search

Ss1.1-Pey1-19A05.5

Sequence:


               
               TCTAACTCCTGCAGTAATCCCATAGCAGATAAGATGTAAGCAAGTACCGCCTCGTGCTCT
TTCAGCCGCCTGTTTGCTAAGATGCCCTTTCTCTCTCTGTCCACCGTTTTCAGTCTTTGT
AGACAGCAGATTAATTCAGACAGCTTTGTTGATCTGGCCAGATGCTTGTTCTCTTTCTGT
CCGAAGGCCAGAGACCATCCCAGGAAGAGTGGTGGGTGGCTTATACACTGGAAATGTAGC
AGAATTGTTGGATTGATGCTTTGAAAAAACACATGTGAGCTTCAGAGGAAGGATGGGCAA
ATCTGGTTGAGCTGGTGAAACTCACTTTCCTGGAGATGCCTTAACCCACGTTGGTTTGGG
CGGTGCGGTTCAGAGGTCACTTTTGTTCCCTCCTGCCTTGCCGGGAGGGACGTCCCTACA
CAGAGCCCTGGCTTTGTGGCTGTGGGGATTCGAGGTAGCATTCCAAGATCAGATATGCTT
TTCCTCACTTTGGAGACGAACACTCTGGGTTTTAGAGCATTAACCTGCCTAATCTTCATG
GTGAAAATGACACCTCTATTCTAGTCATGCTGTGCATGTTGCTTTCTCTGTTGGGGTCTA
TATAAATGTGTTGAACTCTTACCTACATTCCAAAGAAGTTTTGCGGAACCATAAATATAT
GTATGCATATACATATATAAAATATATATATTAAAATGAAATTATCAGGAATACTGCCTC
AGTTATTGAACTTTTTTTAGAATACTTTTTTTTAAGCTGAGAAGTATAGGGGTGAAAGAG
ATGTTATATTGTGTTTGACTATTTTCCAACTTGTATTTTCATATAATTTATATTTTTTAA
AAGCTGAAAATTTAAACGCAAGATGAAAAAAGGAAAAGCAGGTGCTTTTTAAAAATCAGA
ACTGAGGTAGCTTAGAGATGTAGCGATATAAGTGTCTATGTGTTGTTTTTTTTTTTTAAA
TGCAAAAACATTTCTTATGGGGGAGTTTTTTTGTTTGTTTATTTTAGTAGCTGATGCTGG
CACATCATTTTGCTGGAGAGTTTTTTATATACTGTAGCCTGATTTCATATTGTATTTTAA
ACTGTGTGAGATTAAAAGCAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAACTCCTGCAGTAATCCCATAGCAGATAAGATGTAAGCAAGTACCGCCTCGTGCTCT
TTCAGCCGCCTGTTTGCTAAGATGCCCTTTCTCTCTCTGTCCACCGTTTTCAGTCTTTGT
AGACAGCAGATTAATTCAGACAGCTTTGTTGATCTGGCCAGATGCTTGTTCTCTTTCTGT
CCGAAGGCCAGAGACCATCCCAGGAAGAGTGGTGGGTGGCTTATACACTGGAAATGTAGC
AGAATTGTTGGATTGATGCTTTGAAAAAACACATGTGAGCTTCAGAGGAAGGATGGGCAA
ATCTGGTTGAGCTGGTGAAACTCACTTTCCTGGAGATGCCTTAACCCACGTTGGTTTGGG
CGGTGCGGTTCAGAGGTCACTTTTGTTCCCTCCTGCCTTGCCGGGAGGGACGTCCCTACA
CAGAGCCCTGGCTTTGTGGCTGTGGGGATTCGAGGTAGCATTCCAAGATCAGATATGCTT
TTCCTCACTTTGGAGACGAACACTCTGGGTTTTAGAGCATTAACCTGCCTAATCTTCATG
GTGAAAATGACACCTCTATTCTAGTCATGCTGTGCATGTTGCTTTCTCTGTTGGGGTCTA
TATAAATGTGTTGAACTCTTACCTACATTCCAAAGAAGTTTTGCGGAACCATAAATATAT
GTATGCATATACATATATAAAATATATATATTAAAATGAAATTATCAGGAATACTGCCTC
AGTTATTGAACTTTTTTTAGAATACTTTTTTTTAAGCTGAGAAGTATAGGGGTGAAAGAG
ATGTTATATTGTGTTTGACTATTTTCCAACTTGTATTTTCATATAATTTATATTTTTTAA
AAGCTGAAAATTTAAACGCAAGATGAAAAAAGGAAAAGCAGGTGCTTTTTAAAAATCAGA
ACTGAGGTAGCTTAGAGATGTAGCGATATAAGTGTCTATGTGTTGTTTTTTTTTTTTAAA
TGCAAAAACATTTCTTATGGGGGAGTTTTTTTGTTTGTTTATTTTAGTAGCTGATGCTGG
CACATCATTTTGCTGGAGAGTTTTTTATATACTGTAGCCTGATTTCATATTGTATTTTAA
ACTGTGTGAGATTAAAAGCAAAGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               87-1104, gnl|bosTau2|chr29 (23682206-23683250)
               

               
               87-1104, gnl|Hg17|chr11 (127834895-127833883)
               

               
               87-1104, gnl|Mm7|chr9 (32658422-32659429)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-1104, gnl|bosTau2|chr29 (23682206-23683250)
               

               
               87-1104, gnl|Hg17|chr11 (127834895-127833883)
               

               
               87-1104, gnl|Mm7|chr9 (32658422-32659429)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               fty (0.703359)
               

               
               lnt (0.569233)
               

               
               thg (0.253582)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.703359)
               

               
               lnt (0.569233)
               

               
               thg (0.253582)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	87-1104, gnl\|bosTau2\|chr29 (23682206-23683250)
	87-1104, gnl\|Hg17\|chr11 (127834895-127833883)
	87-1104, gnl\|Mm7\|chr9 (32658422-32659429)

	fty (0.703359)
	lnt (0.569233)
	thg (0.253582)
	eru (0.240096)
	med (0.232504)
	jca (0.22792)
	sag (0.182715)
	sin (0.174948)
	bfe (0.149858)
	fat (0.147427)
	spl (0.143184)
	ste (0.135208)
	ova (0.129132)
	tra (0.123092)
	eep (0.122564)
	ecc (0.115035)
	cbl (0.114797)
	eje (0.0988338)
	ldo (0.0970026)