Non-Coding RNA Search

Ss1.1-Pey1-21B05.5

Sequence:


               
               GGGCATCGCCCCCGCCAGCCTGGCCAGGCTGTGGAGGGGGCCCCAGGCTGCACCAAGGGT
GACAAGTCCCTGGGTCCCTGTGTCAGTGCCTTAGAACCTCCTCCTCCTTCTTGGGGGACC
TCTGGGGCCCTGTGTGCCACGCTCCCTCTCTTCTCTCCCTCTCTCTGACCACCGTGTTTC
TTTGCTGCCAAACTGGGCCCCTCGGCCCCTTCTGATCCTGCCTGGGGGAGGAGCAAGGTT
TTGCTGCCCCACGCCTTGGGCCCCCAGCCTGGGAACTGTGGATACCAAGTGCCTTTCCGA
GAGCCCTCTTCCCTGCCTGGTTTTCCCAGGGCCACAATCCGGGTCAGTTCATGCCTGGTA
AAGCCTTCAGGTTGCTGCAATCGAGGCTGGTGGGGGTCGGACCGTGTCTCCCCACCTCCT
CCCTCCCTTGAGATGGCCACGCCCCCACCAGTCTGCCCAAGAGAGATCCCTCACCCCTTG
TGAAGGGAGCAGGGTTCTAGTCTGTTAGGACCCCGGGAATCAGCTTCTCTGGGCTCATCA
GCACCTGAGGGGCTACTTCCTACATGGCCGAGCTCCAGCCTCTCCTGTCTGCCCTGACCC
CGCTGAAGCCCTGGGGCTTGACACCCCTGGCTCCAAGTGTGGGGGCATACGAAGGAAAGG
ACCCCTTTGTGGTGCCATATAAATATGTATATGTGTATATAGATTTTTAGGGGAAGGGGA
GAGGGAAGGGTTGGGGTAGAGACCCCCCTCCCTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCATCGCCCCCGCCAGCCTGGCCAGGCTGTGGAGGGGGCCCCAGGCTGCACCAAGGGT
GACAAGTCCCTGGGTCCCTGTGTCAGTGCCTTAGAACCTCCTCCTCCTTCTTGGGGGACC
TCTGGGGCCCTGTGTGCCACGCTCCCTCTCTTCTCTCCCTCTCTCTGACCACCGTGTTTC
TTTGCTGCCAAACTGGGCCCCTCGGCCCCTTCTGATCCTGCCTGGGGGAGGAGCAAGGTT
TTGCTGCCCCACGCCTTGGGCCCCCAGCCTGGGAACTGTGGATACCAAGTGCCTTTCCGA
GAGCCCTCTTCCCTGCCTGGTTTTCCCAGGGCCACAATCCGGGTCAGTTCATGCCTGGTA
AAGCCTTCAGGTTGCTGCAATCGAGGCTGGTGGGGGTCGGACCGTGTCTCCCCACCTCCT
CCCTCCCTTGAGATGGCCACGCCCCCACCAGTCTGCCCAAGAGAGATCCCTCACCCCTTG
TGAAGGGAGCAGGGTTCTAGTCTGTTAGGACCCCGGGAATCAGCTTCTCTGGGCTCATCA
GCACCTGAGGGGCTACTTCCTACATGGCCGAGCTCCAGCCTCTCCTGTCTGCCCTGACCC
CGCTGAAGCCCTGGGGCTTGACACCCCTGGCTCCAAGTGTGGGGGCATACGAAGGAAAGG
ACCCCTTTGTGGTGCCATATAAATATGTATATGTGTATATAGATTTTTAGGGGAAGGGGA
GAGGGAAGGGTTGGGGTAGAGACCCCCCTCCCTCAC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               44-162, + strand, RNAz p=0.934947
               

               
               308-461, - strand, RNAz p=0.981289
               

               
               600-717, - strand, RNAz p=0.990244

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-162, + strand, RNAz p=0.934947
               

               
               308-461, - strand, RNAz p=0.981289
               

               
               600-717, - strand, RNAz p=0.990244

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               619-713, - strand, RNAmicro p=0.95599

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               619-713, - strand, RNAmicro p=0.95599

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-717, gnl|bosTau2|chr2 (59673047-59672326)
               

               
               4-717, gnl|Hg17|chr2 (219094793-219095440)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-717, gnl|bosTau2|chr2 (59673047-59672326)
               

               
               4-717, gnl|Hg17|chr2 (219094793-219095440)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mcp (0.170648)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	44-162, + strand, RNAz p=0.934947
	308-461, - strand, RNAz p=0.981289
	600-717, - strand, RNAz p=0.990244

	4-717, gnl\|bosTau2\|chr2 (59673047-59672326)
	4-717, gnl\|Hg17\|chr2 (219094793-219095440)