Non-Coding RNA Search

Ss1.1-Pey1-21B06.5

Sequence:


               
               CAAGGAGAAAGCTATACACATATTTCATGTGTTTCCCAAAGTAGGTCAAGTGGCTGTTGG
TTTTGGCTTTTTGAGGTGACAGTGGAAAGGATTTGAGGTGACAGTGGAAAGGATTTGGAG
GGGGAGAAAGCAGGGAGTAGTTGAAAACCTTGGATCATTTTTCCTGACTCTAGTTGCCAA
ATGGCCGTTATATGCTTTTAACCTTTGTTTCTGTTGTCTGTCAGGGTTGAATTAAGAAGC
TACTGGTTTATTCCCAATTATTGATGCTCTTTAGATATGTTGAAATCCTTTTTTCACCCA
GGAGGGGCCAGTTGAAAATCTGTGACTCAAGAGGCAGTGAATGAAATACCGTTTTCTGGG
GGAAAAATTGGTTGGCTACTTGATGTTAATTATGGCACAGTAACAGGAAAAGGTTGTGTC
TGTGTTTTTAAGTTTTTCCTTATTCTGCTTTTTTGCTGCTATAAGAGTTTTCTGAAATTT
ATATTTTAAACTTTTCATGCACTTTACTGTTTCTAGTCTCAAAATGTGATATTTTTAATA
AACAAGAAATTTTCCATTATGTGAATGAAATTTTAAAAGAAAATAGCCTATATTTGTGTC
TCACTAATATATAAAGTACAGGTCAAATTTAAATTATTTAATTAGTTTTAAATATATACA
ATTTGTCTCCTCTTTCAAACCTGACATCTTAGGCTGTTTTATTAGTCTTAAATGATGCAT
TTCCTTTGGTTGTTTTATACTAATTTCTTCCATAGTAAATTAATCAGGCTACATAAGAGA
ATATTTCCCCTGAAGGGTAATTTTAGTGGGATGAGGGTGGTGGGATGATGTAATATCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGAGAAAGCTATACACATATTTCATGTGTTTCCCAAAGTAGGTCAAGTGGCTGTTGG
TTTTGGCTTTTTGAGGTGACAGTGGAAAGGATTTGAGGTGACAGTGGAAAGGATTTGGAG
GGGGAGAAAGCAGGGAGTAGTTGAAAACCTTGGATCATTTTTCCTGACTCTAGTTGCCAA
ATGGCCGTTATATGCTTTTAACCTTTGTTTCTGTTGTCTGTCAGGGTTGAATTAAGAAGC
TACTGGTTTATTCCCAATTATTGATGCTCTTTAGATATGTTGAAATCCTTTTTTCACCCA
GGAGGGGCCAGTTGAAAATCTGTGACTCAAGAGGCAGTGAATGAAATACCGTTTTCTGGG
GGAAAAATTGGTTGGCTACTTGATGTTAATTATGGCACAGTAACAGGAAAAGGTTGTGTC
TGTGTTTTTAAGTTTTTCCTTATTCTGCTTTTTTGCTGCTATAAGAGTTTTCTGAAATTT
ATATTTTAAACTTTTCATGCACTTTACTGTTTCTAGTCTCAAAATGTGATATTTTTAATA
AACAAGAAATTTTCCATTATGTGAATGAAATTTTAAAAGAAAATAGCCTATATTTGTGTC
TCACTAATATATAAAGTACAGGTCAAATTTAAATTATTTAATTAGTTTTAAATATATACA
ATTTGTCTCCTCTTTCAAACCTGACATCTTAGGCTGTTTTATTAGTCTTAAATGATGCAT
TTCCTTTGGTTGTTTTATACTAATTTCTTCCATAGTAAATTAATCAGGCTACATAAGAGA
ATATTTCCCCTGAAGGGTAATTTTAGTGGGATGAGGGTGGTGGGATGATGTAATATCATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               580-699, - strand, RNAz p=0.954739

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               580-699, - strand, RNAz p=0.954739

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               92-838, gnl|bosTau2|chr6 (50554473-50553723)
               

               
               92-838, gnl|Hg17|chr4 (78997738-78996992)
               

               
               92-838, gnl|Mm7|chr5 (95289428-95288663)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-838, gnl|bosTau2|chr6 (50554473-50553723)
               

               
               92-838, gnl|Hg17|chr4 (78997738-78996992)
               

               
               92-838, gnl|Mm7|chr5 (95289428-95288663)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	92-838, gnl\|bosTau2\|chr6 (50554473-50553723)
	92-838, gnl\|Hg17\|chr4 (78997738-78996992)
	92-838, gnl\|Mm7\|chr5 (95289428-95288663)