Ss1.1-Pey1-22H01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGTTGGCACGGCCAGTGTCCTCCAGCCAGTGAAGAAGCGCAAAGTGGACATGCCCATCA CTGTGTCCTATGCCATCTCAGGGCAGCCAGTGGCTACCGTGCTGGCCATTCCACAGGGCC AGCAGCAGAGTTACGTGTCTTTGAGGCCAGACTTACTGACAGTAGACAGTGCCCACCTAT ACAGTGCCACTGGGACCATTACTAGCCCTACGGGAGAAACTTGGACCATCCCTGTTTACT CTGCCCAGCCCCGGGGGGACCCTCAACAGCAGAGCATTACCCATATTGCCATTCCCCAGG AAGCCTACAATGCAGTTCATGTCAGTGGCTCACCCACAGCCCTGACAGCTGTAAAGCTGG AGGATGACAAGGAGAAGATGGTGGGCACCACATCTGTCGTGAAAAACTCCCATGAAGAGG TAGTGCAGACCCTTGCAAACTCTCTCTTTCCAGCACAGTTCATGAATGGCAACATCCACA TTCCAGTGGCTGTGCAAGCCGTGGCAGGCACATACCAGAATACAGCTCAGACTGTCCATA TATGGGACCCCCAGCAGCAGCCACAACAACAAACTCCCCAGGAACAGACACCACCGCCAC CGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCCAGGTTACTTGTTCAGCTCAAACTGTCC AAGTAGCTGAAGTTGAACCACAGTCACAGCCACAGCCTTCCCCAGAACTTCTACTTCCAA ATTCTCTGAAACCAGAAGAAGGGCTTGAAGTATGGAAAAACTGGGCACAGACCAAGAACG CTGAGCTAGAGAAGGATGCTCAGAACAGACTGGCACCCATTGGCAGGCGTCAACTGCTGC GATTCCAGGAAGATCTCATCTCTTCTGCTGTGGCCGAGTTGAATTATGGGCTGTGTCTAA TGACACGGGAAGCTCGAAATGGAGAAGGTGAACCCTATGACCCAGATGTGCTGTACTATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGTTGGCACGGCCAGTGTCCTCCAGCCAGTGAAGAAGCGCAAAGTGGACATGCCCATCA CTGTGTCCTATGCCATCTCAGGGCAGCCAGTGGCTACCGTGCTGGCCATTCCACAGGGCC AGCAGCAGAGTTACGTGTCTTTGAGGCCAGACTTACTGACAGTAGACAGTGCCCACCTAT ACAGTGCCACTGGGACCATTACTAGCCCTACGGGAGAAACTTGGACCATCCCTGTTTACT CTGCCCAGCCCCGGGGGGACCCTCAACAGCAGAGCATTACCCATATTGCCATTCCCCAGG AAGCCTACAATGCAGTTCATGTCAGTGGCTCACCCACAGCCCTGACAGCTGTAAAGCTGG AGGATGACAAGGAGAAGATGGTGGGCACCACATCTGTCGTGAAAAACTCCCATGAAGAGG TAGTGCAGACCCTTGCAAACTCTCTCTTTCCAGCACAGTTCATGAATGGCAACATCCACA TTCCAGTGGCTGTGCAAGCCGTGGCAGGCACATACCAGAATACAGCTCAGACTGTCCATA TATGGGACCCCCAGCAGCAGCCACAACAACAAACTCCCCAGGAACAGACACCACCGCCAC CGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCCAGGTTACTTGTTCAGCTCAAACTGTCC AAGTAGCTGAAGTTGAACCACAGTCACAGCCACAGCCTTCCCCAGAACTTCTACTTCCAA ATTCTCTGAAACCAGAAGAAGGGCTTGAAGTATGGAAAAACTGGGCACAGACCAAGAACG CTGAGCTAGAGAAGGATGCTCAGAACAGACTGGCACCCATTGGCAGGCGTCAACTGCTGC GATTCCAGGAAGATCTCATCTCTTCTGCTGTGGCCGAGTTGAATTATGGGCTGTGTCTAA TGACACGGGAAGCTCGAAATGGAGAAGGTGAACCCTATGACCCAGATGTGCTGTACTATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 42-201, - strand, RNAz p=0.99206 | |
| 242-361, - strand, RNAz p=0.951538 | |
| 531-648, - strand, RNAz p=0.614557 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-201, - strand, RNAz p=0.99206 | |
| 242-361, - strand, RNAz p=0.951538 | |
| 531-648, - strand, RNAz p=0.614557 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 3-648, gnl|bosTau2|chr22 (40040359-40039720) | |
| 3-648, gnl|Hg17|chr3 (49069931-49069298) | |
| 3-648, gnl|Mm7|chr9 (108246614-108247247) | |
| 826-960, gnl|bosTau2|chr22 (40033949-40033815) | |
| 826-960, gnl|canFam2|chr20 (43123849-43123678) | |
| 826-960, gnl|danRer3|chr11 (17613389-17613560) | |
| 826-960, gnl|dasNov1|scaffold_95241 (6783-6954) | |
| 826-960, gnl|echTel1|scaffold_302147 (36528-36357) | |
| 826-960, gnl|fr1|chrUn (178750750-178750918) | |
| 826-960, gnl|galGal2|chr12 (11596622-11596456) | |
| 826-960, gnl|hg17|chr3 (49058857-49059028) | |
| 826-960, gnl|Hg17|chr3 (49059016-49058882) | |
| 826-960, gnl|loxAfr1|scaffold_81319 (25994-26165) | |
| 826-960, gnl|mm7|chr9 (108255285-108255114) | |
| 826-960, gnl|Mm7|chr9 (108255124-108255258) | |
| 826-960, gnl|monDom2|scaffold_5 (76373764-76373593) | |
| 826-960, gnl|oryCun1|scaffold_207864 (85846-86017) | |
| 826-960, gnl|panTro1|chr2 (50581290-50581461) | |
| 826-960, gnl|rheMac2|chr2 (87408781-87408610) | |
| 826-960, gnl|rn3|chr8 (113612071-113611900) | |
| 826-960, gnl|tetNig1|chr11 (5694285-5694120) | |
| 826-960, gnl|xenTro1|scaffold_72 (2487377-2487540) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-648, gnl|bosTau2|chr22 (40040359-40039720) | |
| 3-648, gnl|Hg17|chr3 (49069931-49069298) | |
| 3-648, gnl|Mm7|chr9 (108246614-108247247) | |
| 826-960, gnl|bosTau2|chr22 (40033949-40033815) | |
| 826-960, gnl|canFam2|chr20 (43123849-43123678) | |
| 826-960, gnl|danRer3|chr11 (17613389-17613560) | |
| 826-960, gnl|dasNov1|scaffold_95241 (6783-6954) | |
| 826-960, gnl|echTel1|scaffold_302147 (36528-36357) | |
| 826-960, gnl|fr1|chrUn (178750750-178750918) | |
| 826-960, gnl|galGal2|chr12 (11596622-11596456) | |
| 826-960, gnl|hg17|chr3 (49058857-49059028) | |
| 826-960, gnl|Hg17|chr3 (49059016-49058882) | |
| 826-960, gnl|loxAfr1|scaffold_81319 (25994-26165) | |
| 826-960, gnl|mm7|chr9 (108255285-108255114) | |
| 826-960, gnl|Mm7|chr9 (108255124-108255258) | |
| 826-960, gnl|monDom2|scaffold_5 (76373764-76373593) | |
| 826-960, gnl|oryCun1|scaffold_207864 (85846-86017) | |
| 826-960, gnl|panTro1|chr2 (50581290-50581461) | |
| 826-960, gnl|rheMac2|chr2 (87408781-87408610) | |
| 826-960, gnl|rn3|chr8 (113612071-113611900) | |
| 826-960, gnl|tetNig1|chr11 (5694285-5694120) | |
| 826-960, gnl|xenTro1|scaffold_72 (2487377-2487540) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |