Ss1.1-Pey1-23D01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAAGCAGGGAGCGGGGCGGTTGGGGGGGACCCGCCGCGGCTTCTGCCACCGCCGCCAC CACCATTTCTGTGCTCGTGGCGTGGGAAAGGAGGCGTGAATCCCGGGCGCGAGCCGGTGG CGGCGCCGCTACGGGAGGGTCGGCGGTGGGAAGGCGATGGCGGATATAGATAAACTCAAC ATCGACAGCATCATCCAACGGCTGCTGGAAGTGAGAGGGTCCAAACCTGGTAAGAATGTC CAGCTACAAGAGAATGAAATCAGAGGACTGTGCTTAAAGTCCCGAGAGATCTTTCTCAGT CAGCCTATCCTACTCGAACTTGAAGCACCACTCAAAATATGTGGTGATATCCATGGGCAA TACTATGATTTGCTTCGACTTTTTGAATACGGTGGTTTCCCGCCAGAAAGCAATTACCTG TTTCTTGGGGACTATGTGGACAGGGGAAAACAGTCATTGGAAACTATCTGCCTTTTATTG GCTTACAAAATCAAATATCCCGAGAATTTTTTTCTTCTCAGAGGAAACCACGAATGTGCC AGCATCAATAGAATTTATGGATTTTATGATGAATGTAAAAGAAGATATAACATTAAACTA TGGAAAACTTTCACAGACTGCTTTAACTGTTTACCGATAGCAGCCATCGTGGATGAGAAA ATATTCTGCTGTCATGGAGGTTTATCACCAGATCTTCAATCTATGGAGCAGATTCGGCGA ATTATGCGACCAACTGATGTACCAGATCAAGGTCTTCTTTGTGATCTTTTGTGGTCTGAC CCCGATAAAGATGTCTTAGGCTGGGGTGAAAATGACAGAGGAGTGTCCTTCACATTTGGT GCAGAAGTGGTTGCAAAATTTCTCCATAAGCATGATTTGGATCTTATATGTAGAGCCCAT CAGGTGGTTGAAGATGGATATGAATTTTTTGCAAAGAGGCAGTTGGTCACTCTGTTTTCT GCGCCCAATTATTGTGGAGAGTTTGACAATGCAGGTGCCATGATGAGTGTGGACGAAACA CTAATGTGTTCTTTTCAGATTTTAAAGCCTGCAGAGAAAAAGAAGCCGAATGCCACGAGA CCTGTAACACCTCCAAGGGGTATGATCACAAAGCAAGCAAAGAAATAGATGTCATTTTGA CATTGCCTAGTTGGGACTTGTAACATATAGTGTATAACCTTCATTTTTAAAACTGTAATG TGTATTGGTCAGCTTGCTCAAATAGTGTTTGTGGGGCCCCCCAGTTCCATTTTGACTTAA TGAATGGTATTTGCTGGTTGTAACAGCAAATGAGAGACTCTCCCAAGGAAAAATGTTTTG TTTAATTCTCTGTTCTTTTACAAACAACTTTTAATGATGGTGTTAAAGCTGTACACCCCA GGAGAGTTTATCCTGTCTTGGGGAGTGAGTGTACATTTGATCTTTTTTTAATTCAGTACA GCCCATGAATAATGTAAATGTTCATTTTTCTCTAGGATTTAAAGAGAGCCCTAGGGTGCT CAATCTGTACATGTTATTGTCATAAGATGCATACTGTTGATGCAAACCACTGTGAAATTT TTTTTTTTTTCAAAGGGATTGCTTTTTTTTCTCATTGTCTTGTCCTGTACAAACTAGTTT TTATAGCTATAAACATTAGGAGTAACTTTCAACCTTGCCAGCATCACTGGTATGTATATT TAATTAAAGCACACTTTCCCCTACAGTATACTTAAAATGATGATTAAAGCCATTATTTTA AATGTTTGTGACTCTTTCCTAAAGCCAAAGTTTCTGTTGAAATATATATTGACACTCCCC TAAGTACAAGGTAGCATGGTTGTATACACATGCCTCCTTTGGGGATTCAAAAACAGGTTT TTGAGTTTGAATAGCAATTAGTAACATAGTGCTGTTTAAGCTATTAATGATTAAAGTTAA TAACATTTTATACAATTTCCATATAGTCTATTCATTAAGTAATCTTTTTACAGTTACATC AGGCCTGAACCCGTCCATTCAGAAAGCTTCAAATTATAGAAACAATACTGTTCTATACGA GTGACCGATTATGCTTTCTTTGGCCTACATTCTTTATTCTGCGGTGAAGTTGAGGCTTAT AAGTCAAAGCAAAGGAACTAACTTACTATCCACCAGTTTATACAGAACTCACAGTGTCTA TGACTTTTTTAAACTAAGATCTGTTAAAAAGAAATCTGTTTCAACAGATGACCGTGTACA ATACCATGTGGTGAAAATGAATTCAGACTTATTAAATGATGAACTTGTTAAATCCTCTCA GTGTCAGTTTATCAGCACAATACACGCAGAAGAACTGTTGATGGCATATCGAATAGGTTT TAATTAATAAATTGCTCTGGAAACCAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAAGCAGGGAGCGGGGCGGTTGGGGGGGACCCGCCGCGGCTTCTGCCACCGCCGCCAC CACCATTTCTGTGCTCGTGGCGTGGGAAAGGAGGCGTGAATCCCGGGCGCGAGCCGGTGG CGGCGCCGCTACGGGAGGGTCGGCGGTGGGAAGGCGATGGCGGATATAGATAAACTCAAC ATCGACAGCATCATCCAACGGCTGCTGGAAGTGAGAGGGTCCAAACCTGGTAAGAATGTC CAGCTACAAGAGAATGAAATCAGAGGACTGTGCTTAAAGTCCCGAGAGATCTTTCTCAGT CAGCCTATCCTACTCGAACTTGAAGCACCACTCAAAATATGTGGTGATATCCATGGGCAA TACTATGATTTGCTTCGACTTTTTGAATACGGTGGTTTCCCGCCAGAAAGCAATTACCTG TTTCTTGGGGACTATGTGGACAGGGGAAAACAGTCATTGGAAACTATCTGCCTTTTATTG GCTTACAAAATCAAATATCCCGAGAATTTTTTTCTTCTCAGAGGAAACCACGAATGTGCC AGCATCAATAGAATTTATGGATTTTATGATGAATGTAAAAGAAGATATAACATTAAACTA TGGAAAACTTTCACAGACTGCTTTAACTGTTTACCGATAGCAGCCATCGTGGATGAGAAA ATATTCTGCTGTCATGGAGGTTTATCACCAGATCTTCAATCTATGGAGCAGATTCGGCGA ATTATGCGACCAACTGATGTACCAGATCAAGGTCTTCTTTGTGATCTTTTGTGGTCTGAC CCCGATAAAGATGTCTTAGGCTGGGGTGAAAATGACAGAGGAGTGTCCTTCACATTTGGT GCAGAAGTGGTTGCAAAATTTCTCCATAAGCATGATTTGGATCTTATATGTAGAGCCCAT CAGGTGGTTGAAGATGGATATGAATTTTTTGCAAAGAGGCAGTTGGTCACTCTGTTTTCT GCGCCCAATTATTGTGGAGAGTTTGACAATGCAGGTGCCATGATGAGTGTGGACGAAACA CTAATGTGTTCTTTTCAGATTTTAAAGCCTGCAGAGAAAAAGAAGCCGAATGCCACGAGA CCTGTAACACCTCCAAGGGGTATGATCACAAAGCAAGCAAAGAAATAGATGTCATTTTGA CATTGCCTAGTTGGGACTTGTAACATATAGTGTATAACCTTCATTTTTAAAACTGTAATG TGTATTGGTCAGCTTGCTCAAATAGTGTTTGTGGGGCCCCCCAGTTCCATTTTGACTTAA TGAATGGTATTTGCTGGTTGTAACAGCAAATGAGAGACTCTCCCAAGGAAAAATGTTTTG TTTAATTCTCTGTTCTTTTACAAACAACTTTTAATGATGGTGTTAAAGCTGTACACCCCA GGAGAGTTTATCCTGTCTTGGGGAGTGAGTGTACATTTGATCTTTTTTTAATTCAGTACA GCCCATGAATAATGTAAATGTTCATTTTTCTCTAGGATTTAAAGAGAGCCCTAGGGTGCT CAATCTGTACATGTTATTGTCATAAGATGCATACTGTTGATGCAAACCACTGTGAAATTT TTTTTTTTTTCAAAGGGATTGCTTTTTTTTCTCATTGTCTTGTCCTGTACAAACTAGTTT TTATAGCTATAAACATTAGGAGTAACTTTCAACCTTGCCAGCATCACTGGTATGTATATT TAATTAAAGCACACTTTCCCCTACAGTATACTTAAAATGATGATTAAAGCCATTATTTTA AATGTTTGTGACTCTTTCCTAAAGCCAAAGTTTCTGTTGAAATATATATTGACACTCCCC TAAGTACAAGGTAGCATGGTTGTATACACATGCCTCCTTTGGGGATTCAAAAACAGGTTT TTGAGTTTGAATAGCAATTAGTAACATAGTGCTGTTTAAGCTATTAATGATTAAAGTTAA TAACATTTTATACAATTTCCATATAGTCTATTCATTAAGTAATCTTTTTACAGTTACATC AGGCCTGAACCCGTCCATTCAGAAAGCTTCAAATTATAGAAACAATACTGTTCTATACGA GTGACCGATTATGCTTTCTTTGGCCTACATTCTTTATTCTGCGGTGAAGTTGAGGCTTAT AAGTCAAAGCAAAGGAACTAACTTACTATCCACCAGTTTATACAGAACTCACAGTGTCTA TGACTTTTTTAAACTAAGATCTGTTAAAAAGAAATCTGTTTCAACAGATGACCGTGTACA ATACCATGTGGTGAAAATGAATTCAGACTTATTAAATGATGAACTTGTTAAATCCTCTCA GTGTCAGTTTATCAGCACAATACACGCAGAAGAACTGTTGATGGCATATCGAATAGGTTT TAATTAATAAATTGCTCTGGAAACCAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 382-1881, - strand, RNAz p=0.976179 | |
| 480-594, + strand, RNAz p=0.837786 | |
| 1228-1339, - strand, RNAz p=0.999541 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 382-1881, - strand, RNAz p=0.976179 | |
| 480-594, + strand, RNAz p=0.837786 | |
| 1228-1339, - strand, RNAz p=0.999541 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 1-219, gnl|bosTau2|chr17 (30021470-30021688) | |
| 1-219, gnl|Hg17|chr12 (109643387-109643170) | |
| 1-219, gnl|Mm7|chr5 (121392630-121392885) | |
| 343-594, gnl|bosTau2|chr11 (51184935-51185187) | |
| 343-594, gnl|canFam2|chr17 (25786260-25786465) | |
| 343-594, gnl|danRer3|chr17 (1292952-1293157) | |
| 343-594, gnl|dasNov1|scaffold_83781 (10173-9968) | |
| 343-594, gnl|echTel1|scaffold_268310 (8024-8229) | |
| 343-594, gnl|fr1|chrUn (192602860-192602655) | |
| 343-594, gnl|galGal2|chr3 (23553031-23552826) | |
| 343-594, gnl|hg17|chr2 (28913325-28913530) | |
| 343-594, gnl|Hg17|chr2 (28913325-28913577) | |
| 343-594, gnl|loxAfr1|scaffold_2968 (28963-29168) | |
| 343-594, gnl|mm7|chr5 (31513205-31513410) | |
| 343-594, gnl|Mm7|chr5 (31513205-31513455) | |
| 343-594, gnl|monDom2|scaffold_1 (146824502-146824297) | |
| 343-594, gnl|oryCun1|scaffold_8520 (3617-3412) | |
| 343-594, gnl|panTro1|chr12 (29871789-29871993) | |
| 343-594, gnl|rheMac2|chr13 (28773472-28773677) | |
| 343-594, gnl|rn3|chr6 (24082742-24082537) | |
| 343-594, gnl|tetNig1|chr10 (8137754-8137959) | |
| 343-594, gnl|xenTro1|scaffold_501 (234369-234574) | |
| 860-1339, gnl|bosTau2|chr21 (36219844-36220318) | |
| 860-1339, gnl|Hg17|chr12 (109622802-109621398) | |
| 901-1038, gnl|bosTau2|chr11 (51195699-51195836) | |
| 901-1038, gnl|canFam2|chr17 (25799503-25799606) | |
| 901-1038, gnl|danRer3|chr17 (1295467-1295563) | |
| 901-1038, gnl|dasNov1|scaffold_63002 (2215-2112) | |
| 901-1038, gnl|echTel1|scaffold_268310 (19576-19679) | |
| 901-1038, gnl|fr1|chrUn (192600881-192600781) | |
| 901-1038, gnl|galGal2|chr3 (23539841-23539747) | |
| 901-1038, gnl|hg17|chr2 (28928366-28928469) | |
| 901-1038, gnl|Hg17|chr2 (28928377-28928514) | |
| 901-1038, gnl|loxAfr1|scaffold_2968 (41938-42041) | |
| 901-1038, gnl|mm7|chr5 (31520074-31520176) | |
| 901-1038, gnl|Mm7|chr5 (31520084-31520221) | |
| 901-1038, gnl|monDom2|scaffold_1 (146795727-146795631) | |
| 901-1038, gnl|oryCun1|scaffold_213132 (126471-126573) | |
| 901-1038, gnl|panTro1|chr12 (29886609-29886712) | |
| 901-1038, gnl|rheMac2|chr13 (28788512-28788615) | |
| 901-1038, gnl|rn3|chr6 (24076058-24075956) | |
| 901-1038, gnl|tetNig1|chr10 (8138826-8138917) | |
| 901-1038, gnl|xenTro1|scaffold_178 (1351515-1351613) | |
| 1699-2272, gnl|bosTau2|chr21 (36220934-36221508) | |
| 1699-2272, gnl|Hg17|chr12 (109621001-109620430) | |
| 1699-2272, gnl|Mm7|chr7 (115663947-115664508) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-219, gnl|bosTau2|chr17 (30021470-30021688) | |
| 1-219, gnl|Hg17|chr12 (109643387-109643170) | |
| 1-219, gnl|Mm7|chr5 (121392630-121392885) | |
| 343-594, gnl|bosTau2|chr11 (51184935-51185187) | |
| 343-594, gnl|canFam2|chr17 (25786260-25786465) | |
| 343-594, gnl|danRer3|chr17 (1292952-1293157) | |
| 343-594, gnl|dasNov1|scaffold_83781 (10173-9968) | |
| 343-594, gnl|echTel1|scaffold_268310 (8024-8229) | |
| 343-594, gnl|fr1|chrUn (192602860-192602655) | |
| 343-594, gnl|galGal2|chr3 (23553031-23552826) | |
| 343-594, gnl|hg17|chr2 (28913325-28913530) | |
| 343-594, gnl|Hg17|chr2 (28913325-28913577) | |
| 343-594, gnl|loxAfr1|scaffold_2968 (28963-29168) | |
| 343-594, gnl|mm7|chr5 (31513205-31513410) | |
| 343-594, gnl|Mm7|chr5 (31513205-31513455) | |
| 343-594, gnl|monDom2|scaffold_1 (146824502-146824297) | |
| 343-594, gnl|oryCun1|scaffold_8520 (3617-3412) | |
| 343-594, gnl|panTro1|chr12 (29871789-29871993) | |
| 343-594, gnl|rheMac2|chr13 (28773472-28773677) | |
| 343-594, gnl|rn3|chr6 (24082742-24082537) | |
| 343-594, gnl|tetNig1|chr10 (8137754-8137959) | |
| 343-594, gnl|xenTro1|scaffold_501 (234369-234574) | |
| 860-1339, gnl|bosTau2|chr21 (36219844-36220318) | |
| 860-1339, gnl|Hg17|chr12 (109622802-109621398) | |
| 901-1038, gnl|bosTau2|chr11 (51195699-51195836) | |
| 901-1038, gnl|canFam2|chr17 (25799503-25799606) | |
| 901-1038, gnl|danRer3|chr17 (1295467-1295563) | |
| 901-1038, gnl|dasNov1|scaffold_63002 (2215-2112) | |
| 901-1038, gnl|echTel1|scaffold_268310 (19576-19679) | |
| 901-1038, gnl|fr1|chrUn (192600881-192600781) | |
| 901-1038, gnl|galGal2|chr3 (23539841-23539747) | |
| 901-1038, gnl|hg17|chr2 (28928366-28928469) | |
| 901-1038, gnl|Hg17|chr2 (28928377-28928514) | |
| 901-1038, gnl|loxAfr1|scaffold_2968 (41938-42041) | |
| 901-1038, gnl|mm7|chr5 (31520074-31520176) | |
| 901-1038, gnl|Mm7|chr5 (31520084-31520221) | |
| 901-1038, gnl|monDom2|scaffold_1 (146795727-146795631) | |
| 901-1038, gnl|oryCun1|scaffold_213132 (126471-126573) | |
| 901-1038, gnl|panTro1|chr12 (29886609-29886712) | |
| 901-1038, gnl|rheMac2|chr13 (28788512-28788615) | |
| 901-1038, gnl|rn3|chr6 (24076058-24075956) | |
| 901-1038, gnl|tetNig1|chr10 (8138826-8138917) | |
| 901-1038, gnl|xenTro1|scaffold_178 (1351515-1351613) | |
| 1699-2272, gnl|bosTau2|chr21 (36220934-36221508) | |
| 1699-2272, gnl|Hg17|chr12 (109621001-109620430) | |
| 1699-2272, gnl|Mm7|chr7 (115663947-115664508) |
| Expressed library(ies): 48 entry(ies) | More info |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
| liv (1.46284) | |
| tra (1.35401) | |
| spl (1.28866) | |
| tbr (0.770891) | |
| bfe (0.749288) | |
| lin (0.728014) | |
| cbe (0.717703) | |
| sin (0.69979) | |
| rec (0.692281) | |
| vin (0.665115) | |
| tes (0.623441) | |
| fbs (0.526039) | |
| ret (0.514933) | |
| fco (0.471624) | |
| mgp (0.461361) | |
| isp (0.451128) | |
| ste (0.405625) | |
| nje (0.33184) | |
| mga (0.32041) | |
| sme (0.305437) | |
| jej (0.296765) | |
| fat (0.294855) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| eep (0.245128) | |
| nms (0.213858) | |
| hea (0.204499) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nep (0.183925) | |
| sag (0.182715) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (1.46284) | |
| tra (1.35401) | |
| spl (1.28866) | |
| tbr (0.770891) | |
| bfe (0.749288) | |
| lin (0.728014) | |
| cbe (0.717703) | |
| sin (0.69979) | |
| rec (0.692281) | |
| vin (0.665115) | |
| tes (0.623441) | |
| fbs (0.526039) | |
| ret (0.514933) | |
| fco (0.471624) | |
| mgp (0.461361) | |
| isp (0.451128) | |
| ste (0.405625) | |
| nje (0.33184) | |
| mga (0.32041) | |
| sme (0.305437) | |
| jej (0.296765) | |
| fat (0.294855) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| eep (0.245128) | |
| nms (0.213858) | |
| hea (0.204499) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nep (0.183925) | |
| sag (0.182715) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |