Non-Coding RNA Search

Ss1.1-Pey1-24C02.5

Sequence:


               
               GAGGAATCTTTTATTCCACTGACAATCAATTGCTGGCCCTCGGAAAGTGGAAATGGTTGT
GATGTCAACATAGAATATGAACTGCAAGAAGATAATTTAGAACTGAATGATGTGATTATC
ACCATCCCACTCCCATCTGGTGTTGGTGCACCGGTGATTGGCGAAATTGATGGCGAGTAT
CGACATGACAGTCGACGAAATACTTTGGAGTGGTGCCTGCCAGTGATTGATGCCAAAAAT
AAGAGCGGCAGCCTTGAGTTCAGCATTGCTGGGCAGCCCAACGATTTCTTCCCTGTTCAA
GTCTCCTTCGTCTCCAAAAAAAATTACTGTAACATACAGGTTACCAAAGTGACCCAGGTA
GATGGAAACAGCCCTGTAAGGTTTTCCACAGAGACCACTTTCCTAGTGGATAAGTATGAA
ATTCTGTAATACCAAGAAGAAGGAACCGAAAAGGAACATTTTCAAATTAATAAAGAAGAA
GCCAACAGTGGCTGAAGTTTTTTCCAAATCTACAAGCCATTGGAGACCCTTTTTTTCAAA
TACAGTGCACGATTCTCTGAGCGCAAAGGACCCTCAACTCATCCCCAGTGTTTCAGTGTC
ACAGAGACATTCTTTGGCAAAGAAATGACACAAAACATAAAAGGAAAGGCTGCTGATTTC
TTTGGCAGATTTTACTGGCCAGCAGGATAGCAAGCTCTCCAGAGACTGCCCCCAGTTAAA
AACTTTCTCTGCCTTCTCCTGAGTTGCTCTTTTATTTTAATCTCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAATCTTTTATTCCACTGACAATCAATTGCTGGCCCTCGGAAAGTGGAAATGGTTGT
GATGTCAACATAGAATATGAACTGCAAGAAGATAATTTAGAACTGAATGATGTGATTATC
ACCATCCCACTCCCATCTGGTGTTGGTGCACCGGTGATTGGCGAAATTGATGGCGAGTAT
CGACATGACAGTCGACGAAATACTTTGGAGTGGTGCCTGCCAGTGATTGATGCCAAAAAT
AAGAGCGGCAGCCTTGAGTTCAGCATTGCTGGGCAGCCCAACGATTTCTTCCCTGTTCAA
GTCTCCTTCGTCTCCAAAAAAAATTACTGTAACATACAGGTTACCAAAGTGACCCAGGTA
GATGGAAACAGCCCTGTAAGGTTTTCCACAGAGACCACTTTCCTAGTGGATAAGTATGAA
ATTCTGTAATACCAAGAAGAAGGAACCGAAAAGGAACATTTTCAAATTAATAAAGAAGAA
GCCAACAGTGGCTGAAGTTTTTTCCAAATCTACAAGCCATTGGAGACCCTTTTTTTCAAA
TACAGTGCACGATTCTCTGAGCGCAAAGGACCCTCAACTCATCCCCAGTGTTTCAGTGTC
ACAGAGACATTCTTTGGCAAAGAAATGACACAAAACATAAAAGGAAAGGCTGCTGATTTC
TTTGGCAGATTTTACTGGCCAGCAGGATAGCAAGCTCTCCAGAGACTGCCCCCAGTTAAA
AACTTTCTCTGCCTTCTCCTGAGTTGCTCTTTTATTTTAATCTCTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61809865|ref|XP_585838.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61809865|ref|XP_585838.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               338-496, + strand, RNAz p=0.857224

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               338-496, + strand, RNAz p=0.857224

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX640860, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX640860, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               23-134, gnl|bosTau2|chr15 (14960955-14960844)
               

               
               23-134, gnl|canFam2|chr5 (18156375-18156239)
               

               
               23-134, gnl|danRer3|chr5 (24807569-24807441)
               

               
               23-134, gnl|dasNov1|scaffold_26036 (54479-54346)
               

               
               23-134, gnl|echTel1|scaffold_316157 (75638-75502)
               

               
               23-134, gnl|fr1|chrUn (211578407-211578281)
               

               
               23-134, gnl|galGal2|chr24 (5156833-5156697)
               

               
               23-134, gnl|hg17|chr11 (117969499-117969634)
               

               
               23-134, gnl|Hg17|chr11 (117969512-117969623)
               

               
               23-134, gnl|mm7|chr9 (44684797-44684661)
               

               
               23-134, gnl|Mm7|chr9 (44684781-44684670)
               

               
               23-134, gnl|monDom2|scaffold_2 (120066178-120066043)
               

               
               23-134, gnl|oryCun1|scaffold_99406 (3870-3734)
               

               
               23-134, gnl|panTro1|chr9 (119978125-119978260)
               

               
               23-134, gnl|rheMac2|chr14 (116993936-116994071)
               

               
               23-134, gnl|rn3|chr8 (47716424-47716286)
               

               
               23-134, gnl|tetNig1|chr16 (8088659-8088795)
               

               
               23-134, gnl|xenTro1|scaffold_75 (352351-352485)
               


               
               338-768, gnl|bosTau2|chr15 (14956710-14956287)
               

               
               338-768, gnl|Hg17|chr11 (117976548-117977309)
               

               
               338-768, gnl|Mm7|chr9 (44678363-44677946)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-134, gnl|bosTau2|chr15 (14960955-14960844)
               

               
               23-134, gnl|canFam2|chr5 (18156375-18156239)
               

               
               23-134, gnl|danRer3|chr5 (24807569-24807441)
               

               
               23-134, gnl|dasNov1|scaffold_26036 (54479-54346)
               

               
               23-134, gnl|echTel1|scaffold_316157 (75638-75502)
               

               
               23-134, gnl|fr1|chrUn (211578407-211578281)
               

               
               23-134, gnl|galGal2|chr24 (5156833-5156697)
               

               
               23-134, gnl|hg17|chr11 (117969499-117969634)
               

               
               23-134, gnl|Hg17|chr11 (117969512-117969623)
               

               
               23-134, gnl|mm7|chr9 (44684797-44684661)
               

               
               23-134, gnl|Mm7|chr9 (44684781-44684670)
               

               
               23-134, gnl|monDom2|scaffold_2 (120066178-120066043)
               

               
               23-134, gnl|oryCun1|scaffold_99406 (3870-3734)
               

               
               23-134, gnl|panTro1|chr9 (119978125-119978260)
               

               
               23-134, gnl|rheMac2|chr14 (116993936-116994071)
               

               
               23-134, gnl|rn3|chr8 (47716424-47716286)
               

               
               23-134, gnl|tetNig1|chr16 (8088659-8088795)
               

               
               23-134, gnl|xenTro1|scaffold_75 (352351-352485)
               


               
               338-768, gnl|bosTau2|chr15 (14956710-14956287)
               

               
               338-768, gnl|Hg17|chr11 (117976548-117977309)
               

               
               338-768, gnl|Mm7|chr9 (44678363-44677946)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.229595)
               

               
               ill (0.175593)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               ill (0.175593)
               

               
               spc (0.113366)

	23-134, gnl\|bosTau2\|chr15 (14960955-14960844)
	23-134, gnl\|canFam2\|chr5 (18156375-18156239)
	23-134, gnl\|danRer3\|chr5 (24807569-24807441)
	23-134, gnl\|dasNov1\|scaffold_26036 (54479-54346)
	23-134, gnl\|echTel1\|scaffold_316157 (75638-75502)
	23-134, gnl\|fr1\|chrUn (211578407-211578281)
	23-134, gnl\|galGal2\|chr24 (5156833-5156697)
	23-134, gnl\|hg17\|chr11 (117969499-117969634)
	23-134, gnl\|Hg17\|chr11 (117969512-117969623)
	23-134, gnl\|mm7\|chr9 (44684797-44684661)
	23-134, gnl\|Mm7\|chr9 (44684781-44684670)
	23-134, gnl\|monDom2\|scaffold_2 (120066178-120066043)
	23-134, gnl\|oryCun1\|scaffold_99406 (3870-3734)
	23-134, gnl\|panTro1\|chr9 (119978125-119978260)
	23-134, gnl\|rheMac2\|chr14 (116993936-116994071)
	23-134, gnl\|rn3\|chr8 (47716424-47716286)
	23-134, gnl\|tetNig1\|chr16 (8088659-8088795)
	23-134, gnl\|xenTro1\|scaffold_75 (352351-352485)

	338-768, gnl\|bosTau2\|chr15 (14956710-14956287)
	338-768, gnl\|Hg17\|chr11 (117976548-117977309)
	338-768, gnl\|Mm7\|chr9 (44678363-44677946)