Non-Coding RNA Search

Ss1.1-Pey1-24H11.5

Sequence:


               
               CCGGGCACCCCTCTTTTTACTCAAAGGCACTGACTGCTATATCTCCTGGCCACTGCGATA
CAAATCTATTTATTTTCAGGCGTGGAGAAAGGGGAGAAGATGGGGAAGGGGGGGTGCCAG
AGCTCGAGTGCCATGGCCCTTGCTGCCTTCCTTCATGGCACTTACGACTCGGCGGGACCC
ATGGGCCACCGCTCAGGGCACCCCTACCACCTGCATCTTCATCCCCTGACCCAGGCCCCC
CAGACCCCACGAGACGTTTGGAGATTCGAAACTTTGTCTTCACCCTCTCCCCTACCCCTA
GCCCTCTCCCAATTTTTTAAAGCACTTTTTAGATTTTTTTTTCTTTTCCTCCTTAAAAAC
AAAATTTATATATAGATATATATATATATAAAATATACTTTTCCTCAGAGGAGCAGGTGA
CAGTGTGGGGTGAAAGAGCCAAGGGCAGAGGGAACCCAGGGTCTCATGGTGGCAGGGATG
TGGGGAGCGAGAGTGTCCAGAAGTTCCAGTGTCACAAAAGCAATAAAAACAAGATTTTAC
AAAATGAAAGGAAAAACAAAAACAAAACAAAACAAAAAAATCACAAGACAACCAACCACA
AATAGAAGTCTTGGCACTTTGTAACAGAACGGGTACTACACTTTATCTTAATTCTTAATT
TAAGAACATGTTTACAAGTTGCAACCAACTTCTATGAAAAGTCAAAAAGACAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGCACCCCTCTTTTTACTCAAAGGCACTGACTGCTATATCTCCTGGCCACTGCGATA
CAAATCTATTTATTTTCAGGCGTGGAGAAAGGGGAGAAGATGGGGAAGGGGGGGTGCCAG
AGCTCGAGTGCCATGGCCCTTGCTGCCTTCCTTCATGGCACTTACGACTCGGCGGGACCC
ATGGGCCACCGCTCAGGGCACCCCTACCACCTGCATCTTCATCCCCTGACCCAGGCCCCC
CAGACCCCACGAGACGTTTGGAGATTCGAAACTTTGTCTTCACCCTCTCCCCTACCCCTA
GCCCTCTCCCAATTTTTTAAAGCACTTTTTAGATTTTTTTTTCTTTTCCTCCTTAAAAAC
AAAATTTATATATAGATATATATATATATAAAATATACTTTTCCTCAGAGGAGCAGGTGA
CAGTGTGGGGTGAAAGAGCCAAGGGCAGAGGGAACCCAGGGTCTCATGGTGGCAGGGATG
TGGGGAGCGAGAGTGTCCAGAAGTTCCAGTGTCACAAAAGCAATAAAAACAAGATTTTAC
AAAATGAAAGGAAAAACAAAAACAAAACAAAACAAAAAAATCACAAGACAACCAACCACA
AATAGAAGTCTTGGCACTTTGTAACAGAACGGGTACTACACTTTATCTTAATTCTTAATT
TAAGAACATGTTTACAAGTTGCAACCAACTTCTATGAAAAGTCAAAAAGACAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               107-220, + strand, RNAz p=0.999842

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-220, + strand, RNAz p=0.999842

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015898, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015898, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-728, gnl|bosTau2|chr7 (15788573-15787920)
               

               
               40-728, gnl|Hg17|chr19 (3998119-3997431)
               

               
               40-728, gnl|Mm7|chr10 (80940901-80941518)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-728, gnl|bosTau2|chr7 (15788573-15787920)
               

               
               40-728, gnl|Hg17|chr19 (3998119-3997431)
               

               
               40-728, gnl|Mm7|chr10 (80940901-80941518)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cut (0.339847)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

	40-728, gnl\|bosTau2\|chr7 (15788573-15787920)
	40-728, gnl\|Hg17\|chr19 (3998119-3997431)
	40-728, gnl\|Mm7\|chr10 (80940901-80941518)

	cut (0.339847)
	ste (0.270416)
	cbe (0.239234)
	sto (0.179824)
	gul (0.177588)
	fco (0.157208)
	hyp (0.142837)
	che (0.136314)
	ute (0.132784)
	ese (0.126502)