Ss1.1-Pey1-25G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGCGGAACGTCCAGCGCAGGCAGAACAGCCGCCCGTCCGCCGCACCATGTCCTCCGCC AGGTTCGACTCCTCAGACCGCTCGGCCTGGTATATGGGGCCCGTGTCTCGCCAGGAGGCG CAGACCCGGCTCCAGGGCCAGCGCCACGGAATGTTTCTGGTCCGCGATTCGTCCACCTGC CCCGGCGACTACGTGCTGTCGGTATCCGAGAACTCGCGGGTGTCCCACTACATCATCAAC TCGCTGCCCAACCGCCGCTTCAAGATCGGGGACCAGGAGTTCGACCACCTGCCGGCCCTG CTGGAGTTCTACAAGATCCACTACCTGGACACCACCACCCTCATCGAGCCAGCGCCCAGG TATCCAAGCCCACCAGTGGGCTCTGTGTCCGCACCCAACCTGCCCACAGCGGAAGAAAAT CTGGAATATGTACGGACTCTCTATGATTTTCCTGGGAATGATGCCGAAGACCTGCCCTTT AAAAAGGGTGAGATCTTGGTGATAATAGAGAAGCCAGAAGAACAGTGGTGGAGTGCCCGG AACAAGGAGGGCCGGGTCGGGATGATCCCTGTCCCTTACGTGGAGAAGCTCGTGAGGTCC TCACCACTTGGAAAGCATGGGAATAGGAATTCCAACAGTTACGGAATCCCAGAACCTGCT CACGCGTACGCTCAGCCTCAGACCACAGCTCCTCTGCCTGCCGTTCCCAGTACTCCTGGG GTGACGGTCAACCCTCTGCCATCCACGCAGAATGGACCTGTCTTTGCAAAAGCAATCCAG AAAAGAGTGCCCTGTGCGTATGACAAGACCGCCTTGGCATTAGAGGTCGGTGACATTGTC AAAGTCACACGGATGAACATAAACGGCCAGTGGGAAGGTGAGGTGAATGGGCGCAAAGGG CTCTTCCCCTTCACACACGTCAAAATCATCGACCCCCAGAACCCTGATGAGAATGAGTGA CGCCACCGCCCCAGCCTGCTGCTTTGTTGTCCTGCTTTCCTTGGAGGTGGGAAAGTGTCC TCGCGGCAGGCCACGCACTGCCATCATCCAGCTTCTGCAGCGGGTAGCCTCACACACATT GGAATGCTCACGGTGGCTGCCCAGCATTTGTATCATAGTCGTGTTGTCAGTAGACGATTC TAGAGTTCTTTGGATCTGAACTGGAAACACTGGTGGAGGCACACAAGTGAGAGGGGGGTG AGGACAGGGCTTCCTTCTGGCTAGTGCCCTGCCTGTCCCTGGGGCTGACCACCCGTCCTG CACGAGCTCAAGCCTGTGGCCAGCATTGCCCCCTGTGAGCCATGGCACAGGGCCCAGTCG CCAGCATGGTTTTCCTTGAAGAGCGGAGGAAGTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGCGGAACGTCCAGCGCAGGCAGAACAGCCGCCCGTCCGCCGCACCATGTCCTCCGCC AGGTTCGACTCCTCAGACCGCTCGGCCTGGTATATGGGGCCCGTGTCTCGCCAGGAGGCG CAGACCCGGCTCCAGGGCCAGCGCCACGGAATGTTTCTGGTCCGCGATTCGTCCACCTGC CCCGGCGACTACGTGCTGTCGGTATCCGAGAACTCGCGGGTGTCCCACTACATCATCAAC TCGCTGCCCAACCGCCGCTTCAAGATCGGGGACCAGGAGTTCGACCACCTGCCGGCCCTG CTGGAGTTCTACAAGATCCACTACCTGGACACCACCACCCTCATCGAGCCAGCGCCCAGG TATCCAAGCCCACCAGTGGGCTCTGTGTCCGCACCCAACCTGCCCACAGCGGAAGAAAAT CTGGAATATGTACGGACTCTCTATGATTTTCCTGGGAATGATGCCGAAGACCTGCCCTTT AAAAAGGGTGAGATCTTGGTGATAATAGAGAAGCCAGAAGAACAGTGGTGGAGTGCCCGG AACAAGGAGGGCCGGGTCGGGATGATCCCTGTCCCTTACGTGGAGAAGCTCGTGAGGTCC TCACCACTTGGAAAGCATGGGAATAGGAATTCCAACAGTTACGGAATCCCAGAACCTGCT CACGCGTACGCTCAGCCTCAGACCACAGCTCCTCTGCCTGCCGTTCCCAGTACTCCTGGG GTGACGGTCAACCCTCTGCCATCCACGCAGAATGGACCTGTCTTTGCAAAAGCAATCCAG AAAAGAGTGCCCTGTGCGTATGACAAGACCGCCTTGGCATTAGAGGTCGGTGACATTGTC AAAGTCACACGGATGAACATAAACGGCCAGTGGGAAGGTGAGGTGAATGGGCGCAAAGGG CTCTTCCCCTTCACACACGTCAAAATCATCGACCCCCAGAACCCTGATGAGAATGAGTGA CGCCACCGCCCCAGCCTGCTGCTTTGTTGTCCTGCTTTCCTTGGAGGTGGGAAAGTGTCC TCGCGGCAGGCCACGCACTGCCATCATCCAGCTTCTGCAGCGGGTAGCCTCACACACATT GGAATGCTCACGGTGGCTGCCCAGCATTTGTATCATAGTCGTGTTGTCAGTAGACGATTC TAGAGTTCTTTGGATCTGAACTGGAAACACTGGTGGAGGCACACAAGTGAGAGGGGGGTG AGGACAGGGCTTCCTTCTGGCTAGTGCCCTGCCTGTCCCTGGGGCTGACCACCCGTCCTG CACGAGCTCAAGCCTGTGGCCAGCATTGCCCCCTGTGAGCCATGGCACAGGGCCCAGTCG CCAGCATGGTTTTCCTTGAAGAGCGGAGGAAGTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 710-827, - strand, RNAz p=0.566524 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 710-827, - strand, RNAz p=0.566524 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 64-240, gnl|bosTau2|chr19 (17103059-17102883) | |
| 64-240, gnl|canFam2|chr26 (33646381-33646158) | |
| 64-240, gnl|danRer3|chr21 (9500106-9500324) | |
| 64-240, gnl|dasNov1|scaffold_16286 (46462-46685) | |
| 64-240, gnl|echTel1|scaffold_317548 (50717-50494) | |
| 64-240, gnl|fr1|chrUn (293017767-293017552) | |
| 64-240, gnl|galGal2|chr15 (8213201-8212975) | |
| 64-240, gnl|Hg17|chr17 (1306149-1305973) | |
| 64-240, gnl|hg17|chr22 (19596770-19596993) | |
| 64-240, gnl|loxAfr1|scaffold_27981 (19264-19084) | |
| 64-240, gnl|Mm7|chr11 (75761010-75761186) | |
| 64-240, gnl|mm7|chr16 (17002204-17002427) | |
| 64-240, gnl|monDom2|scaffold_214 (166158-165942) | |
| 64-240, gnl|oryCun1|scaffold_14722 (3472-3695) | |
| 64-240, gnl|panTro1|chr23 (19561035-19561258) | |
| 64-240, gnl|rheMac2|chr10 (64992749-64992526) | |
| 64-240, gnl|rn3|chr11 (85594791-85594568) | |
| 64-240, gnl|tetNig1|chrUn_random (126717488-126717273) | |
| 64-240, gnl|xenTro1|scaffold_169 (895681-895904) | |
| 357-827, gnl|bosTau2|chr17 (45202871-45202404) | |
| 357-827, gnl|Hg17|chr22 (19612618-19613088) | |
| 357-827, gnl|Mm7|chr16 (17018623-17019093) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 64-240, gnl|bosTau2|chr19 (17103059-17102883) | |
| 64-240, gnl|canFam2|chr26 (33646381-33646158) | |
| 64-240, gnl|danRer3|chr21 (9500106-9500324) | |
| 64-240, gnl|dasNov1|scaffold_16286 (46462-46685) | |
| 64-240, gnl|echTel1|scaffold_317548 (50717-50494) | |
| 64-240, gnl|fr1|chrUn (293017767-293017552) | |
| 64-240, gnl|galGal2|chr15 (8213201-8212975) | |
| 64-240, gnl|Hg17|chr17 (1306149-1305973) | |
| 64-240, gnl|hg17|chr22 (19596770-19596993) | |
| 64-240, gnl|loxAfr1|scaffold_27981 (19264-19084) | |
| 64-240, gnl|Mm7|chr11 (75761010-75761186) | |
| 64-240, gnl|mm7|chr16 (17002204-17002427) | |
| 64-240, gnl|monDom2|scaffold_214 (166158-165942) | |
| 64-240, gnl|oryCun1|scaffold_14722 (3472-3695) | |
| 64-240, gnl|panTro1|chr23 (19561035-19561258) | |
| 64-240, gnl|rheMac2|chr10 (64992749-64992526) | |
| 64-240, gnl|rn3|chr11 (85594791-85594568) | |
| 64-240, gnl|tetNig1|chrUn_random (126717488-126717273) | |
| 64-240, gnl|xenTro1|scaffold_169 (895681-895904) | |
| 357-827, gnl|bosTau2|chr17 (45202871-45202404) | |
| 357-827, gnl|Hg17|chr22 (19612618-19613088) | |
| 357-827, gnl|Mm7|chr16 (17018623-17019093) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) |