Ss1.1-Pey1-26C11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGTTCTGTGGTTGGGAGCCGGTCAGAGAGAGCCCCCGGCAGGACCAACCCGACACCCG GCAGCACGACAGCAATGTCCAGCAACAGCTTCGCTTACAATGAACAGTCCGGAGGAGGGG AGGCGACGGAGCTGGGTCAGGAGGCGACCTCAACCATTTCCCCCTCCGGTGCCTTCGGCC TCTTTAGCAGCGATATGAAGAAGAATGAAGACTTAAAGCAAATGTTAGAAAGCAACAAAG ATTCTGCTAAATTGGATGCTATGAAACGGATTGTTGGGATGATTGCAAAAGGGAAAAATG CATCTGAACTGTTTCCTGCTGTTGTGAAGAATGTGGCCAGTAAAAATATTGAGATCAAGA AATTAGTGTATGTTTATCTGGTCCGATATGCTGAAGAACAGCAGGATCTAGCCCTCTTGT CCATAAGTACTTTTCAGCGAGCCCTGAAGGACCCAAATCAACTAATTCGTGCAAGTGCTT TGAGAGTCCTTTCAAGCATCAGAGTGCCAATTATTGTACCTATAATGATGCTCGCTATTA AGGAAGCTTCCGCTGACTTATCACCATACGTAAGGAAGAATGCAGCCCATGCAATACAAA AGTTGTACAGCCTTGATCCAGAGCAGAAGGAAATGTTAATTGAAATAATTGAAAAACTTC TGAAGGATAAAAGCACACTGGTAGCTGGCAGTGTTGTGATGGCTTTTGAAGAAGTATGTC CGGATAGAATAGATCTCATTCACAAGAATTACCGCAAGCTATGTAATTTACTAGTTGATG TAGAAGAGTGGGGGCAGGTTGTCATAATCCACATGCTAACTCGATATGCTCGTACACAGT TTGTCAGTCCTTGGAAAGAGGATGATGGTCTAGAGGACAATGAAAAGGATTTCTATGATT CTGATGAGGAACAGAAGGAAAAGAGTGATAAAAGGAAGAAGGCTTATACTATGGATCCAG ACCATAGACTTTTAATTCGGAATACAAAGCCTTTGCTTCAGAGCAGGAATGCAGCGGTGG TAATGGCAGTTGCTCAGCTGTATTGGCATATAGCACCAAAATCTGAAGTGGGCATTATTT CTAAACCACTGGTGCGTTTACTTCGTAGCAATAGGGAGGTTCAGTATATTGTCCTACAGA ATATAGCAACTATGTCAATTCAAAGAAAGGGTATGTTTGAACCTTATCTGAAGAGTTTCT ATGTCAGGTCAACTGATCCAACTATGATTAAGATACTGAAGCTTGAAATTTTGACAAATT TGGCAAATGAAGCCAACATATCAACTCTTCTTCGAGAATTTCAGACCTACGTGAAAAGCC AGGATAAACAATTTGCAGCAGCCACTATTCAAACTATAGGCAGATGTGCAACCAATATCT CAGAAGTCACTGACACATGCCTCAATGGCCTGGTGTGTCTGCTGTCCAACAGGGATGAAA TAGTTGTTGCTGAAAGTGTGGTTGTTATTAAGAAATTACTGCAAATGCAACCCATTCAAC ATGGTGAAATTATTAAACATATGGCCAAACTCTTGGACAGTATCACTGTTCCTGTGGCTA GAGCAAGTATTCTTTGGCTAATTGGAGAAAACTGTGAACGAGTTCCTATTATTGCCCCTG ATGTTTTGAGGAAGATGGCTAAAAGCTTCACCAGTGAAGATGATCTGGTAAAACTGCAGA TTTTAAATCTGGGAGCGAAATTGTATTTAACCAACTCCAGACAGACAAAATTGCTTACCC AGTACATATTAAATCTCGGCAAGTATGATCAAAACTACGACATCAGAGACCGTACAAGAT TTATTAGGCAGCTTATTGTTCCGAATGAGAAGAGTGGAGCTTTAAGTAAATGCGCCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGTTCTGTGGTTGGGAGCCGGTCAGAGAGAGCCCCCGGCAGGACCAACCCGACACCCG GCAGCACGACAGCAATGTCCAGCAACAGCTTCGCTTACAATGAACAGTCCGGAGGAGGGG AGGCGACGGAGCTGGGTCAGGAGGCGACCTCAACCATTTCCCCCTCCGGTGCCTTCGGCC TCTTTAGCAGCGATATGAAGAAGAATGAAGACTTAAAGCAAATGTTAGAAAGCAACAAAG ATTCTGCTAAATTGGATGCTATGAAACGGATTGTTGGGATGATTGCAAAAGGGAAAAATG CATCTGAACTGTTTCCTGCTGTTGTGAAGAATGTGGCCAGTAAAAATATTGAGATCAAGA AATTAGTGTATGTTTATCTGGTCCGATATGCTGAAGAACAGCAGGATCTAGCCCTCTTGT CCATAAGTACTTTTCAGCGAGCCCTGAAGGACCCAAATCAACTAATTCGTGCAAGTGCTT TGAGAGTCCTTTCAAGCATCAGAGTGCCAATTATTGTACCTATAATGATGCTCGCTATTA AGGAAGCTTCCGCTGACTTATCACCATACGTAAGGAAGAATGCAGCCCATGCAATACAAA AGTTGTACAGCCTTGATCCAGAGCAGAAGGAAATGTTAATTGAAATAATTGAAAAACTTC TGAAGGATAAAAGCACACTGGTAGCTGGCAGTGTTGTGATGGCTTTTGAAGAAGTATGTC CGGATAGAATAGATCTCATTCACAAGAATTACCGCAAGCTATGTAATTTACTAGTTGATG TAGAAGAGTGGGGGCAGGTTGTCATAATCCACATGCTAACTCGATATGCTCGTACACAGT TTGTCAGTCCTTGGAAAGAGGATGATGGTCTAGAGGACAATGAAAAGGATTTCTATGATT CTGATGAGGAACAGAAGGAAAAGAGTGATAAAAGGAAGAAGGCTTATACTATGGATCCAG ACCATAGACTTTTAATTCGGAATACAAAGCCTTTGCTTCAGAGCAGGAATGCAGCGGTGG TAATGGCAGTTGCTCAGCTGTATTGGCATATAGCACCAAAATCTGAAGTGGGCATTATTT CTAAACCACTGGTGCGTTTACTTCGTAGCAATAGGGAGGTTCAGTATATTGTCCTACAGA ATATAGCAACTATGTCAATTCAAAGAAAGGGTATGTTTGAACCTTATCTGAAGAGTTTCT ATGTCAGGTCAACTGATCCAACTATGATTAAGATACTGAAGCTTGAAATTTTGACAAATT TGGCAAATGAAGCCAACATATCAACTCTTCTTCGAGAATTTCAGACCTACGTGAAAAGCC AGGATAAACAATTTGCAGCAGCCACTATTCAAACTATAGGCAGATGTGCAACCAATATCT CAGAAGTCACTGACACATGCCTCAATGGCCTGGTGTGTCTGCTGTCCAACAGGGATGAAA TAGTTGTTGCTGAAAGTGTGGTTGTTATTAAGAAATTACTGCAAATGCAACCCATTCAAC ATGGTGAAATTATTAAACATATGGCCAAACTCTTGGACAGTATCACTGTTCCTGTGGCTA GAGCAAGTATTCTTTGGCTAATTGGAGAAAACTGTGAACGAGTTCCTATTATTGCCCCTG ATGTTTTGAGGAAGATGGCTAAAAGCTTCACCAGTGAAGATGATCTGGTAAAACTGCAGA TTTTAAATCTGGGAGCGAAATTGTATTTAACCAACTCCAGACAGACAAAATTGCTTACCC AGTACATATTAAATCTCGGCAAGTATGATCAAAACTACGACATCAGAGACCGTACAAGAT TTATTAGGCAGCTTATTGTTCCGAATGAGAAGAGTGGAGCTTTAAGTAAATGCGCCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1299-1417, - strand, RNAz p=0.778934 | |
| 1607-1724, - strand, RNAz p=0.598946 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1299-1417, - strand, RNAz p=0.778934 | |
| 1607-1724, - strand, RNAz p=0.598946 |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 16-203, gnl|bosTau2|chr10 (3325299-3325112) | |
| 16-203, gnl|canFam2|chr3 (31369760-31369481) | |
| 16-203, gnl|echTel1|scaffold_271943 (15556-15821) | |
| 16-203, gnl|galGal2|chr13_random (658818-659070) | |
| 16-203, gnl|hg17|chr5 (77626028-77626293) | |
| 16-203, gnl|Hg17|chr5 (77626218-77626031) | |
| 16-203, gnl|mm7|chr13 (91422228-91421955) | |
| 16-203, gnl|Mm7|chr13 (91422029-91422223) | |
| 16-203, gnl|monDom2|scaffold_27 (38065410-38065064) | |
| 16-203, gnl|panTro1|chr4 (37785930-37785665) | |
| 16-203, gnl|rheMac2|chr6 (74523584-74523849) | |
| 16-203, gnl|rn3|chr2 (24590652-24590380) | |
| 448-610, gnl|bosTau2|chr10 (3267827-3267665) | |
| 448-610, gnl|Hg17|chr5 (77559114-77558952) | |
| 448-610, gnl|Mm7|chr13 (91466936-91467098) | |
| 679-861, gnl|bosTau2|chr10 (3254775-3254593) | |
| 679-861, gnl|canFam2|chr3 (31448999-31448798) | |
| 679-861, gnl|danRer3|chr25 (4772283-4772477) | |
| 679-861, gnl|dasNov1|scaffold_61190 (3759-3960) | |
| 679-861, gnl|echTel1|scaffold_186204 (6786-6987) | |
| 679-861, gnl|fr1|chrUn (209984912-209985117) | |
| 679-861, gnl|galGal2|chr13_random (615706-615907) | |
| 679-861, gnl|hg17|chr5 (77547629-77547830) | |
| 679-861, gnl|Hg17|chr5 (77547816-77547634) | |
| 679-861, gnl|mm7|chr13 (91481142-91480942) | |
| 679-861, gnl|Mm7|chr13 (91480953-91481135) | |
| 679-861, gnl|monDom2|scaffold_27 (38222658-38222458) | |
| 679-861, gnl|oryCun1|scaffold_72616 (532-732) | |
| 679-861, gnl|panTro1|chr4 (37864446-37864245) | |
| 679-861, gnl|rheMac2|chr6 (74440070-74440271) | |
| 679-861, gnl|rn3|chr2 (24649931-24649731) | |
| 679-861, gnl|tetNig1|chrUn_random (1669359-1669548) | |
| 679-861, gnl|xenTro1|scaffold_183 (1835095-1834894) | |
| 1299-1437, gnl|bosTau2|chr10 (3218307-3218169) | |
| 1299-1437, gnl|canFam2|chr3 (31494596-31494447) | |
| 1299-1437, gnl|danRer3|chr25 (4763474-4763622) | |
| 1299-1437, gnl|dasNov1|scaffold_68863 (464-315) | |
| 1299-1437, gnl|echTel1|scaffold_315169 (39504-39653) | |
| 1299-1437, gnl|fr1|chrUn (209983247-209983391) | |
| 1299-1437, gnl|galGal2|chr13_random (584629-584778) | |
| 1299-1437, gnl|hg17|chr5 (77494394-77494543) | |
| 1299-1437, gnl|Hg17|chr5 (77494537-77494399) | |
| 1299-1437, gnl|loxAfr1|scaffold_129651 (660-510) | |
| 1299-1437, gnl|mm7|chr13 (91514083-91513938) | |
| 1299-1437, gnl|Mm7|chr13 (91513938-91514076) | |
| 1299-1437, gnl|monDom2|scaffold_27 (38270613-38270465) | |
| 1299-1437, gnl|oryCun1|scaffold_201281 (178103-178250) | |
| 1299-1437, gnl|panTro1|chr4 (37921477-37921328) | |
| 1299-1437, gnl|rheMac2|chr7 (63859062-63858913) | |
| 1299-1437, gnl|rn3|chr2 (24680143-24679998) | |
| 1299-1437, gnl|tetNig1|chrUn_random (1667751-1667893) | |
| 1299-1437, gnl|xenTro1|scaffold_183 (1841261-1841114) | |
| 1548-1724, gnl|bosTau2|chr10 (3205704-3205528) | |
| 1548-1724, gnl|canFam2|chr3 (31516147-31515952) | |
| 1548-1724, gnl|danRer3|chr25 (4760533-4760718) | |
| 1548-1724, gnl|dasNov1|scaffold_55624 (9854-9674) | |
| 1548-1724, gnl|echTel1|scaffold_212683 (397-203) | |
| 1548-1724, gnl|fr1|chrUn (209982733-209982940) | |
| 1548-1724, gnl|galGal2|chr13_random (571764-571954) | |
| 1548-1724, gnl|hg17|chr5 (77472708-77472902) | |
| 1548-1724, gnl|Hg17|chr5 (77472899-77472723) | |
| 1548-1724, gnl|loxAfr1|scaffold_135823 (4646-4841) | |
| 1548-1724, gnl|mm7|chr13 (91525581-91525386) | |
| 1548-1724, gnl|Mm7|chr13 (91525387-91525563) | |
| 1548-1724, gnl|monDom2|scaffold_27 (38300017-38299824) | |
| 1548-1724, gnl|oryCun1|scaffold_201281 (162274-162469) | |
| 1548-1724, gnl|panTro1|chr4 (37943186-37942992) | |
| 1548-1724, gnl|rheMac2|chr6 (74358793-74358987) | |
| 1548-1724, gnl|rn3|chr2 (24692302-24692107) | |
| 1548-1724, gnl|tetNig1|chrUn_random (1667259-1667448) | |
| 1548-1724, gnl|xenTro1|scaffold_1510 (10229-10047) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-203, gnl|bosTau2|chr10 (3325299-3325112) | |
| 16-203, gnl|canFam2|chr3 (31369760-31369481) | |
| 16-203, gnl|echTel1|scaffold_271943 (15556-15821) | |
| 16-203, gnl|galGal2|chr13_random (658818-659070) | |
| 16-203, gnl|hg17|chr5 (77626028-77626293) | |
| 16-203, gnl|Hg17|chr5 (77626218-77626031) | |
| 16-203, gnl|mm7|chr13 (91422228-91421955) | |
| 16-203, gnl|Mm7|chr13 (91422029-91422223) | |
| 16-203, gnl|monDom2|scaffold_27 (38065410-38065064) | |
| 16-203, gnl|panTro1|chr4 (37785930-37785665) | |
| 16-203, gnl|rheMac2|chr6 (74523584-74523849) | |
| 16-203, gnl|rn3|chr2 (24590652-24590380) | |
| 448-610, gnl|bosTau2|chr10 (3267827-3267665) | |
| 448-610, gnl|Hg17|chr5 (77559114-77558952) | |
| 448-610, gnl|Mm7|chr13 (91466936-91467098) | |
| 679-861, gnl|bosTau2|chr10 (3254775-3254593) | |
| 679-861, gnl|canFam2|chr3 (31448999-31448798) | |
| 679-861, gnl|danRer3|chr25 (4772283-4772477) | |
| 679-861, gnl|dasNov1|scaffold_61190 (3759-3960) | |
| 679-861, gnl|echTel1|scaffold_186204 (6786-6987) | |
| 679-861, gnl|fr1|chrUn (209984912-209985117) | |
| 679-861, gnl|galGal2|chr13_random (615706-615907) | |
| 679-861, gnl|hg17|chr5 (77547629-77547830) | |
| 679-861, gnl|Hg17|chr5 (77547816-77547634) | |
| 679-861, gnl|mm7|chr13 (91481142-91480942) | |
| 679-861, gnl|Mm7|chr13 (91480953-91481135) | |
| 679-861, gnl|monDom2|scaffold_27 (38222658-38222458) | |
| 679-861, gnl|oryCun1|scaffold_72616 (532-732) | |
| 679-861, gnl|panTro1|chr4 (37864446-37864245) | |
| 679-861, gnl|rheMac2|chr6 (74440070-74440271) | |
| 679-861, gnl|rn3|chr2 (24649931-24649731) | |
| 679-861, gnl|tetNig1|chrUn_random (1669359-1669548) | |
| 679-861, gnl|xenTro1|scaffold_183 (1835095-1834894) | |
| 1299-1437, gnl|bosTau2|chr10 (3218307-3218169) | |
| 1299-1437, gnl|canFam2|chr3 (31494596-31494447) | |
| 1299-1437, gnl|danRer3|chr25 (4763474-4763622) | |
| 1299-1437, gnl|dasNov1|scaffold_68863 (464-315) | |
| 1299-1437, gnl|echTel1|scaffold_315169 (39504-39653) | |
| 1299-1437, gnl|fr1|chrUn (209983247-209983391) | |
| 1299-1437, gnl|galGal2|chr13_random (584629-584778) | |
| 1299-1437, gnl|hg17|chr5 (77494394-77494543) | |
| 1299-1437, gnl|Hg17|chr5 (77494537-77494399) | |
| 1299-1437, gnl|loxAfr1|scaffold_129651 (660-510) | |
| 1299-1437, gnl|mm7|chr13 (91514083-91513938) | |
| 1299-1437, gnl|Mm7|chr13 (91513938-91514076) | |
| 1299-1437, gnl|monDom2|scaffold_27 (38270613-38270465) | |
| 1299-1437, gnl|oryCun1|scaffold_201281 (178103-178250) | |
| 1299-1437, gnl|panTro1|chr4 (37921477-37921328) | |
| 1299-1437, gnl|rheMac2|chr7 (63859062-63858913) | |
| 1299-1437, gnl|rn3|chr2 (24680143-24679998) | |
| 1299-1437, gnl|tetNig1|chrUn_random (1667751-1667893) | |
| 1299-1437, gnl|xenTro1|scaffold_183 (1841261-1841114) | |
| 1548-1724, gnl|bosTau2|chr10 (3205704-3205528) | |
| 1548-1724, gnl|canFam2|chr3 (31516147-31515952) | |
| 1548-1724, gnl|danRer3|chr25 (4760533-4760718) | |
| 1548-1724, gnl|dasNov1|scaffold_55624 (9854-9674) | |
| 1548-1724, gnl|echTel1|scaffold_212683 (397-203) | |
| 1548-1724, gnl|fr1|chrUn (209982733-209982940) | |
| 1548-1724, gnl|galGal2|chr13_random (571764-571954) | |
| 1548-1724, gnl|hg17|chr5 (77472708-77472902) | |
| 1548-1724, gnl|Hg17|chr5 (77472899-77472723) | |
| 1548-1724, gnl|loxAfr1|scaffold_135823 (4646-4841) | |
| 1548-1724, gnl|mm7|chr13 (91525581-91525386) | |
| 1548-1724, gnl|Mm7|chr13 (91525387-91525563) | |
| 1548-1724, gnl|monDom2|scaffold_27 (38300017-38299824) | |
| 1548-1724, gnl|oryCun1|scaffold_201281 (162274-162469) | |
| 1548-1724, gnl|panTro1|chr4 (37943186-37942992) | |
| 1548-1724, gnl|rheMac2|chr6 (74358793-74358987) | |
| 1548-1724, gnl|rn3|chr2 (24692302-24692107) | |
| 1548-1724, gnl|tetNig1|chrUn_random (1667259-1667448) | |
| 1548-1724, gnl|xenTro1|scaffold_1510 (10229-10047) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) |