Ss1.1-Pey1-28A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGAGGAATAGAGTTCTGTGTTGCTCACATGTTAAAAGTTTGCTCGCCTTTGGAGCCGA GGGAAAACCTATTTTCAGACATCCGTCCATTTTCATCTCGTCATTATTATCAAACAGTGT GACTTGAAAGTGTTGCTTTGTTGTCTGTGTACTGAGTTGTAAAAATCATTTGCAAAAGAG CTCTTATAATGTTGAAATACAGAATTTTTAAACATTTTTAAATATTGTATGAGGCAGTCA AAAAAAGGTTAAGAGGTTGAAATCTTTAAAGTAAAACATTGCCTGAATAAGGAAAGTTTT GATTTCCTTTTCTGTTTTGTGGGCAGTGTGCTCCATAGTACGCAAAGTTGGTTTAAAAAT ATTTCCATTAACTATGTGAGTGAAGTTACCAAGGCAGCTCTTTTCCTCAAAAGTAACATG TTCTCTTTGGAACAGCACATTTAGGGCCATATTAGTACCTAGGATTTACTCAATAAATCC TGATGATGGCTGTGCATAAAAGATCTTTAAGTAAGATTGAGGCCTGTGTAGGTAATAAAA TATTACCAAAGTCTACAAAAGTAAATTAATTTTGCATGTTCTCTTTCATGGAAGGCAGAG AACAGCACTGGTTCTGTTATTTTTAAAATGTATAGATGATTTTTTGATACAAGTTTAATA TTTCTTCCCTCATTGATGATTCTTAGTAGACAGAAACCATTCTTTATATTTGATGTACTG TTTTCAGAAGAATCAACAAGTTCAGAATAGTTATCCAAAATTGTACATTTAGAATGGAGT AGTTTAAATACTAGGTCTCAGAGTTTGAAAAATAGCAAAGAAGACTGGATTTGGAAAGCA GGGTCTGGAATTGCTTGTCAAATTCTGAAGCTATGAAGAATAAATGGTTTGATTTTGGAT TACAAAACCCCATTTATGATTTTAAAAATACACTTGAAATAAAATGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGAGGAATAGAGTTCTGTGTTGCTCACATGTTAAAAGTTTGCTCGCCTTTGGAGCCGA GGGAAAACCTATTTTCAGACATCCGTCCATTTTCATCTCGTCATTATTATCAAACAGTGT GACTTGAAAGTGTTGCTTTGTTGTCTGTGTACTGAGTTGTAAAAATCATTTGCAAAAGAG CTCTTATAATGTTGAAATACAGAATTTTTAAACATTTTTAAATATTGTATGAGGCAGTCA AAAAAAGGTTAAGAGGTTGAAATCTTTAAAGTAAAACATTGCCTGAATAAGGAAAGTTTT GATTTCCTTTTCTGTTTTGTGGGCAGTGTGCTCCATAGTACGCAAAGTTGGTTTAAAAAT ATTTCCATTAACTATGTGAGTGAAGTTACCAAGGCAGCTCTTTTCCTCAAAAGTAACATG TTCTCTTTGGAACAGCACATTTAGGGCCATATTAGTACCTAGGATTTACTCAATAAATCC TGATGATGGCTGTGCATAAAAGATCTTTAAGTAAGATTGAGGCCTGTGTAGGTAATAAAA TATTACCAAAGTCTACAAAAGTAAATTAATTTTGCATGTTCTCTTTCATGGAAGGCAGAG AACAGCACTGGTTCTGTTATTTTTAAAATGTATAGATGATTTTTTGATACAAGTTTAATA TTTCTTCCCTCATTGATGATTCTTAGTAGACAGAAACCATTCTTTATATTTGATGTACTG TTTTCAGAAGAATCAACAAGTTCAGAATAGTTATCCAAAATTGTACATTTAGAATGGAGT AGTTTAAATACTAGGTCTCAGAGTTTGAAAAATAGCAAAGAAGACTGGATTTGGAAAGCA GGGTCTGGAATTGCTTGTCAAATTCTGAAGCTATGAAGAATAAATGGTTTGATTTTGGAT TACAAAACCCCATTTATGATTTTAAAAATACACTTGAAATAAAATGAT |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 4-377, gnl|bosTau2|chr9 (17768317-17767943) | |
| 4-377, gnl|canFam2|chr1 (60945688-60945379) | |
| 4-377, gnl|canFam2|chr1 (60945321-60945723) | |
| 4-377, gnl|canFam2|chr1 (60945321-60945738) | |
| 4-377, gnl|dasNov1|scaffold_84708 (6626-6310) | |
| 4-377, gnl|dasNov1|scaffold_84708 (6250-6659) | |
| 4-377, gnl|dasNov1|scaffold_84708 (6250-6678) | |
| 4-377, gnl|hg17|chr13 (98059378-98059717) | |
| 4-377, gnl|hg17|chr13 (22389071-22389511) | |
| 4-377, gnl|hg17|chr6 (118135282-118135822) | |
| 4-377, gnl|Hg17|chr6 (118135365-118135842) | |
| 4-377, gnl|loxAfr1|scaffold_29974 (11259-11569) | |
| 4-377, gnl|loxAfr1|scaffold_29974 (11644-11213) | |
| 4-377, gnl|loxAfr1|scaffold_29974 (11644-11194) | |
| 4-377, gnl|mm7|chr10 (52254461-52254187) | |
| 4-377, gnl|mm7|chr10 (52254121-52254497) | |
| 4-377, gnl|mm7|chr10 (52254121-52254514) | |
| 4-377, gnl|Mm7|chr10 (52254192-52254533) | |
| 4-377, gnl|monDom2|scaffold_0 (99691033-99690598) | |
| 4-377, gnl|monDom2|scaffold_0 (99691033-99690566) | |
| 4-377, gnl|oryCun1|scaffold_186306 (16882-16560) | |
| 4-377, gnl|oryCun1|scaffold_186306 (16501-16922) | |
| 4-377, gnl|oryCun1|scaffold_186306 (16501-16941) | |
| 4-377, gnl|panTro1|chr14 (81290073-81290409) | |
| 4-377, gnl|panTro1|chr14_random (5392713-5393155) | |
| 4-377, gnl|panTro1|chr5 (120521395-120521938) | |
| 4-377, gnl|rheMac2|chr17 (78980201-78980537) | |
| 4-377, gnl|rheMac2|chr4 (146269027-146268591) | |
| 4-377, gnl|rheMac2|chr4 (146269027-146268572) | |
| 4-377, gnl|rn3|chr20 (31182682-31182401) | |
| 4-377, gnl|rn3|chr20 (31182320-31182724) | |
| 4-377, gnl|rn3|chr20 (31182320-31182741) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-377, gnl|bosTau2|chr9 (17768317-17767943) | |
| 4-377, gnl|canFam2|chr1 (60945688-60945379) | |
| 4-377, gnl|canFam2|chr1 (60945321-60945723) | |
| 4-377, gnl|canFam2|chr1 (60945321-60945738) | |
| 4-377, gnl|dasNov1|scaffold_84708 (6626-6310) | |
| 4-377, gnl|dasNov1|scaffold_84708 (6250-6659) | |
| 4-377, gnl|dasNov1|scaffold_84708 (6250-6678) | |
| 4-377, gnl|hg17|chr13 (98059378-98059717) | |
| 4-377, gnl|hg17|chr13 (22389071-22389511) | |
| 4-377, gnl|hg17|chr6 (118135282-118135822) | |
| 4-377, gnl|Hg17|chr6 (118135365-118135842) | |
| 4-377, gnl|loxAfr1|scaffold_29974 (11259-11569) | |
| 4-377, gnl|loxAfr1|scaffold_29974 (11644-11213) | |
| 4-377, gnl|loxAfr1|scaffold_29974 (11644-11194) | |
| 4-377, gnl|mm7|chr10 (52254461-52254187) | |
| 4-377, gnl|mm7|chr10 (52254121-52254497) | |
| 4-377, gnl|mm7|chr10 (52254121-52254514) | |
| 4-377, gnl|Mm7|chr10 (52254192-52254533) | |
| 4-377, gnl|monDom2|scaffold_0 (99691033-99690598) | |
| 4-377, gnl|monDom2|scaffold_0 (99691033-99690566) | |
| 4-377, gnl|oryCun1|scaffold_186306 (16882-16560) | |
| 4-377, gnl|oryCun1|scaffold_186306 (16501-16922) | |
| 4-377, gnl|oryCun1|scaffold_186306 (16501-16941) | |
| 4-377, gnl|panTro1|chr14 (81290073-81290409) | |
| 4-377, gnl|panTro1|chr14_random (5392713-5393155) | |
| 4-377, gnl|panTro1|chr5 (120521395-120521938) | |
| 4-377, gnl|rheMac2|chr17 (78980201-78980537) | |
| 4-377, gnl|rheMac2|chr4 (146269027-146268591) | |
| 4-377, gnl|rheMac2|chr4 (146269027-146268572) | |
| 4-377, gnl|rn3|chr20 (31182682-31182401) | |
| 4-377, gnl|rn3|chr20 (31182320-31182724) | |
| 4-377, gnl|rn3|chr20 (31182320-31182741) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| lin (0.291206) | |
| fce (0.271592) | |
| tra (0.246184) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| ret (0.128733) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.291206) | |
| fce (0.271592) | |
| tra (0.246184) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| ret (0.128733) |