Ss1.1-Pey1-32E07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGCAGGAGAGCCCGCCCTGGCCACATCTTCCGGTAACTCGCATGGCCTGGAAGTGGG CTCGCTGGCTGAGGTTAAAGAGAATCCTCCTTTCTATGGGGTGATCCGTTGGATTGGTCA GCCTCCGGGACTCAATGAAGTGCTAGCTGGACTGGAACTGGAAGACGAGTGTGCGGGCTG TACAGATGGGACCTTCAGGGGCACTCGGTATTTCACCTGTGCCCTGAAGAAGGCTCTGTT TGTTAAACTGAAGAGCTGCAGGCCCGACTCTAGGTTTGCGTCCCTGCAGCCAGTTTCCAA TCAGATCGAACGCTGTAACTCTTTAGCATTTGGAGGCTACTTAAGTGAAGTAGTAGAAGA AAATACTCCACCGAAAATGGAAAAGGAAGGTTTAGAGATAATGATTGGAAAGAAGAAAGG TATCCAGGGTCATTACAATTCTTGTTACTTAGACTCAACCTTATTCTGCTTATTTGCTTT TAGTTCCGTTCTGGACACTGTGTTACTTAGACCCAAAGAAAAGAATGATGTAGAATATTA TAGTGAAACTCAAGAGCTACTGAGGACAGAAATTGTTAATCCTCTGAGAATATACGGATA TGTATGTGCAACAAAGATTATGAAACTGAGGAAAATACTTGAAAAAGTTGAGGCTGCATC AGGATTTACCTCTGAAGAAAAAGATCCTGAAGAATTTTTGAATATCCTGTTTCATCATAT TTTAAGGGTAGAACCATTGTTAAAAATAAGATCAGCAGGTCAAAAAGTACAAGATTGTTA CTTCTATCAAATTTTTATGGAAAAAAATGAGAAAGTTGGAGTTCCTACAATTCAGCAGTT GTTAGAATGGTCTTTTATCAACAGTAACCTGAAATTTGCGGAGGCACCATCATGTCTGAT TATTCAGATGCCTCGATTTGGAAAAGACTTTAAACTATTTAAAAAAATTTTTCCATCTCT GGAATTAAATATAACAGATTTACTTGAAGACACCCCGCGGCAGTGCCGGATATGTGGCGG GCTCGCCATGTACGAGTGCAGAGAGTGCTACGAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGCAGGAGAGCCCGCCCTGGCCACATCTTCCGGTAACTCGCATGGCCTGGAAGTGGG CTCGCTGGCTGAGGTTAAAGAGAATCCTCCTTTCTATGGGGTGATCCGTTGGATTGGTCA GCCTCCGGGACTCAATGAAGTGCTAGCTGGACTGGAACTGGAAGACGAGTGTGCGGGCTG TACAGATGGGACCTTCAGGGGCACTCGGTATTTCACCTGTGCCCTGAAGAAGGCTCTGTT TGTTAAACTGAAGAGCTGCAGGCCCGACTCTAGGTTTGCGTCCCTGCAGCCAGTTTCCAA TCAGATCGAACGCTGTAACTCTTTAGCATTTGGAGGCTACTTAAGTGAAGTAGTAGAAGA AAATACTCCACCGAAAATGGAAAAGGAAGGTTTAGAGATAATGATTGGAAAGAAGAAAGG TATCCAGGGTCATTACAATTCTTGTTACTTAGACTCAACCTTATTCTGCTTATTTGCTTT TAGTTCCGTTCTGGACACTGTGTTACTTAGACCCAAAGAAAAGAATGATGTAGAATATTA TAGTGAAACTCAAGAGCTACTGAGGACAGAAATTGTTAATCCTCTGAGAATATACGGATA TGTATGTGCAACAAAGATTATGAAACTGAGGAAAATACTTGAAAAAGTTGAGGCTGCATC AGGATTTACCTCTGAAGAAAAAGATCCTGAAGAATTTTTGAATATCCTGTTTCATCATAT TTTAAGGGTAGAACCATTGTTAAAAATAAGATCAGCAGGTCAAAAAGTACAAGATTGTTA CTTCTATCAAATTTTTATGGAAAAAAATGAGAAAGTTGGAGTTCCTACAATTCAGCAGTT GTTAGAATGGTCTTTTATCAACAGTAACCTGAAATTTGCGGAGGCACCATCATGTCTGAT TATTCAGATGCCTCGATTTGGAAAAGACTTTAAACTATTTAAAAAAATTTTTCCATCTCT GGAATTAAATATAACAGATTTACTTGAAGACACCCCGCGGCAGTGCCGGATATGTGGCGG GCTCGCCATGTACGAGTGCAGAGAGTGCTACGAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 160-332, + strand, RNAz p=0.845526 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 160-332, + strand, RNAz p=0.845526 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 160-332, gnl|bosTau2|chr18 (18398216-18398389) | |
| 160-332, gnl|canFam2|chr2 (67464239-67464063) | |
| 160-332, gnl|danRer3|chr7 (27655873-27655698) | |
| 160-332, gnl|dasNov1|scaffold_12405 (16872-16697) | |
| 160-332, gnl|echTel1|scaffold_311151 (14773-14597) | |
| 160-332, gnl|fr1|chrUn (282938896-282938721) | |
| 160-332, gnl|galGal2|chr11 (6214773-6214597) | |
| 160-332, gnl|hg17|chr16 (49372651-49372827) | |
| 160-332, gnl|Hg17|chr16 (49372657-49372830) | |
| 160-332, gnl|mm7|chr8 (87323010-87323186) | |
| 160-332, gnl|Mm7|chr8 (87323016-87323189) | |
| 160-332, gnl|monDom2|scaffold_35 (15709092-15709268) | |
| 160-332, gnl|oryCun1|scaffold_207463 (37531-37355) | |
| 160-332, gnl|panTro1|chrUn_random (13195181-13195357) | |
| 160-332, gnl|rheMac2|chr20 (49002075-49002251) | |
| 160-332, gnl|rn3|chr19 (19621277-19621101) | |
| 160-332, gnl|tetNig1|chrUn_random (46263321-46263496) | |
| 160-332, gnl|xenTro1|scaffold_167 (320143-320319) | |
| 461-607, gnl|bosTau2|chr18 (18401227-18401374) | |
| 461-607, gnl|canFam2|chr2 (67461845-67461683) | |
| 461-607, gnl|danRer3|chr7 (27652849-27652685) | |
| 461-607, gnl|dasNov1|scaffold_12405 (14311-14149) | |
| 461-607, gnl|echTel1|scaffold_311151 (10691-10529) | |
| 461-607, gnl|fr1|chrUn (282938165-282938023) | |
| 461-607, gnl|galGal2|chr11 (6212877-6212708) | |
| 461-607, gnl|hg17|chr16 (49375713-49375875) | |
| 461-607, gnl|Hg17|chr16 (49375733-49375880) | |
| 461-607, gnl|loxAfr1|scaffold_7721 (80615-80453) | |
| 461-607, gnl|mm7|chr8 (87325320-87325481) | |
| 461-607, gnl|Mm7|chr8 (87325339-87325485) | |
| 461-607, gnl|monDom2|scaffold_35 (15712927-15713100) | |
| 461-607, gnl|oryCun1|scaffold_207463 (34731-34569) | |
| 461-607, gnl|panTro1|chrUn_random (13198233-13198395) | |
| 461-607, gnl|rheMac2|chr20 (49005107-49005269) | |
| 461-607, gnl|rn3|chr19 (19618045-19617886) | |
| 461-607, gnl|tetNig1|chrUn_random (46264106-46264248) | |
| 461-607, gnl|xenTro1|scaffold_167 (321593-321750) | |
| 749-887, gnl|bosTau2|chr18 (18415054-18415192) | |
| 749-887, gnl|canFam2|chr2 (67453025-67452882) | |
| 749-887, gnl|danRer3|chr7 (27647576-27647433) | |
| 749-887, gnl|dasNov1|scaffold_12405 (4971-4828) | |
| 749-887, gnl|echTel1|scaffold_168902 (2806-2949) | |
| 749-887, gnl|fr1|chrUn (282936927-282936784) | |
| 749-887, gnl|galGal2|chr11 (6209334-6209191) | |
| 749-887, gnl|hg17|chr16 (49382962-49383105) | |
| 749-887, gnl|Hg17|chr16 (49382968-49383106) | |
| 749-887, gnl|loxAfr1|scaffold_13271 (74732-74876) | |
| 749-887, gnl|mm7|chr8 (87333644-87333787) | |
| 749-887, gnl|Mm7|chr8 (87333650-87333788) | |
| 749-887, gnl|monDom2|scaffold_35 (15720946-15721093) | |
| 749-887, gnl|oryCun1|scaffold_207463 (23116-22973) | |
| 749-887, gnl|panTro1|chrUn_random (13205528-13205671) | |
| 749-887, gnl|rn3|chr19 (19603336-19603193) | |
| 749-887, gnl|tetNig1|chrUn_random (46265630-46265773) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 160-332, gnl|bosTau2|chr18 (18398216-18398389) | |
| 160-332, gnl|canFam2|chr2 (67464239-67464063) | |
| 160-332, gnl|danRer3|chr7 (27655873-27655698) | |
| 160-332, gnl|dasNov1|scaffold_12405 (16872-16697) | |
| 160-332, gnl|echTel1|scaffold_311151 (14773-14597) | |
| 160-332, gnl|fr1|chrUn (282938896-282938721) | |
| 160-332, gnl|galGal2|chr11 (6214773-6214597) | |
| 160-332, gnl|hg17|chr16 (49372651-49372827) | |
| 160-332, gnl|Hg17|chr16 (49372657-49372830) | |
| 160-332, gnl|mm7|chr8 (87323010-87323186) | |
| 160-332, gnl|Mm7|chr8 (87323016-87323189) | |
| 160-332, gnl|monDom2|scaffold_35 (15709092-15709268) | |
| 160-332, gnl|oryCun1|scaffold_207463 (37531-37355) | |
| 160-332, gnl|panTro1|chrUn_random (13195181-13195357) | |
| 160-332, gnl|rheMac2|chr20 (49002075-49002251) | |
| 160-332, gnl|rn3|chr19 (19621277-19621101) | |
| 160-332, gnl|tetNig1|chrUn_random (46263321-46263496) | |
| 160-332, gnl|xenTro1|scaffold_167 (320143-320319) | |
| 461-607, gnl|bosTau2|chr18 (18401227-18401374) | |
| 461-607, gnl|canFam2|chr2 (67461845-67461683) | |
| 461-607, gnl|danRer3|chr7 (27652849-27652685) | |
| 461-607, gnl|dasNov1|scaffold_12405 (14311-14149) | |
| 461-607, gnl|echTel1|scaffold_311151 (10691-10529) | |
| 461-607, gnl|fr1|chrUn (282938165-282938023) | |
| 461-607, gnl|galGal2|chr11 (6212877-6212708) | |
| 461-607, gnl|hg17|chr16 (49375713-49375875) | |
| 461-607, gnl|Hg17|chr16 (49375733-49375880) | |
| 461-607, gnl|loxAfr1|scaffold_7721 (80615-80453) | |
| 461-607, gnl|mm7|chr8 (87325320-87325481) | |
| 461-607, gnl|Mm7|chr8 (87325339-87325485) | |
| 461-607, gnl|monDom2|scaffold_35 (15712927-15713100) | |
| 461-607, gnl|oryCun1|scaffold_207463 (34731-34569) | |
| 461-607, gnl|panTro1|chrUn_random (13198233-13198395) | |
| 461-607, gnl|rheMac2|chr20 (49005107-49005269) | |
| 461-607, gnl|rn3|chr19 (19618045-19617886) | |
| 461-607, gnl|tetNig1|chrUn_random (46264106-46264248) | |
| 461-607, gnl|xenTro1|scaffold_167 (321593-321750) | |
| 749-887, gnl|bosTau2|chr18 (18415054-18415192) | |
| 749-887, gnl|canFam2|chr2 (67453025-67452882) | |
| 749-887, gnl|danRer3|chr7 (27647576-27647433) | |
| 749-887, gnl|dasNov1|scaffold_12405 (4971-4828) | |
| 749-887, gnl|echTel1|scaffold_168902 (2806-2949) | |
| 749-887, gnl|fr1|chrUn (282936927-282936784) | |
| 749-887, gnl|galGal2|chr11 (6209334-6209191) | |
| 749-887, gnl|hg17|chr16 (49382962-49383105) | |
| 749-887, gnl|Hg17|chr16 (49382968-49383106) | |
| 749-887, gnl|loxAfr1|scaffold_13271 (74732-74876) | |
| 749-887, gnl|mm7|chr8 (87333644-87333787) | |
| 749-887, gnl|Mm7|chr8 (87333650-87333788) | |
| 749-887, gnl|monDom2|scaffold_35 (15720946-15721093) | |
| 749-887, gnl|oryCun1|scaffold_207463 (23116-22973) | |
| 749-887, gnl|panTro1|chrUn_random (13205528-13205671) | |
| 749-887, gnl|rn3|chr19 (19603336-19603193) | |
| 749-887, gnl|tetNig1|chrUn_random (46265630-46265773) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.146284) | |
| spl (0.143184) | |
| cbl (0.114797) |