Non-Coding RNA Search

Ss1.1-Pey1-33F05.5

Sequence:


               
               CTTCGTGGAGAATTATCTTGGGCTCCTGCAAGTATTTAGTCTTCCTTTCAAGGACCATAA
GGTACATCACTGGGAACATTCCAGTGCAGAATTGACCACCCAAGTACTCACTTCCCATTT
GTTCTCGGGGAACTTCGGGATCCACTACGAAGCGCATCGGCTTAGCCCTGTTTTCAGAGG
ATTGATCTCTGTCCCAACCGGGTTCCTTGAGTTACCTCAGCAGAAGAGTAGGATTAGAGA
AAAAGGAAAGACCTTTTGGCCCTTCAAGCATTAAGGATGTGGTACCACATCCCACGAATG
GATTGCTGGGGCTGGAGGGTATCTAGGTGTCTGTTCTTTAGAAGTTTGTAGAATGTATGT
CTTCAAGGCTGTGAATTCTGTACTAATTATTTTAAGGTCATTCTGTAAGTATATGTTAAA
TTATATAAGTGAACAGGCGAAAAATGTGCAATCCTGAGGACTGCCTAATTTGCAAAGGGT
TCAGGAATATTTTTCAACCTCTTGGTTTATACCCTGAAACACGGTATGTTTATGAACTCA
TTACTGAATCAAGCAGATTTCCAATCAGTTGATTACAGACAAAAAGGGAAAATATGAAAC
ACAGAAAAGGAAAATAAACTGACTTTTATAATAAAAGCCTGTCCATCTGGTTATTTTATG
TATACTCTGAGCTCCGCGTTGTGGAATATGATTCACGTCTTATGGTTTCCCGCTACTGAG
CGTCGCCCGGTGATCCTTCACTGACCCTGCGGTGTCACCAGATTTTGCTGATCTTCCCCT
CCAGTTGCTGAGAGGGCCCCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCGTGGAGAATTATCTTGGGCTCCTGCAAGTATTTAGTCTTCCTTTCAAGGACCATAA
GGTACATCACTGGGAACATTCCAGTGCAGAATTGACCACCCAAGTACTCACTTCCCATTT
GTTCTCGGGGAACTTCGGGATCCACTACGAAGCGCATCGGCTTAGCCCTGTTTTCAGAGG
ATTGATCTCTGTCCCAACCGGGTTCCTTGAGTTACCTCAGCAGAAGAGTAGGATTAGAGA
AAAAGGAAAGACCTTTTGGCCCTTCAAGCATTAAGGATGTGGTACCACATCCCACGAATG
GATTGCTGGGGCTGGAGGGTATCTAGGTGTCTGTTCTTTAGAAGTTTGTAGAATGTATGT
CTTCAAGGCTGTGAATTCTGTACTAATTATTTTAAGGTCATTCTGTAAGTATATGTTAAA
TTATATAAGTGAACAGGCGAAAAATGTGCAATCCTGAGGACTGCCTAATTTGCAAAGGGT
TCAGGAATATTTTTCAACCTCTTGGTTTATACCCTGAAACACGGTATGTTTATGAACTCA
TTACTGAATCAAGCAGATTTCCAATCAGTTGATTACAGACAAAAAGGGAAAATATGAAAC
ACAGAAAAGGAAAATAAACTGACTTTTATAATAAAAGCCTGTCCATCTGGTTATTTTATG
TATACTCTGAGCTCCGCGTTGTGGAATATGATTCACGTCTTATGGTTTCCCGCTACTGAG
CGTCGCCCGGTGATCCTTCACTGACCCTGCGGTGTCACCAGATTTTGCTGATCTTCCCCT
CCAGTTGCTGAGAGGGCCCCTTTT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-764, gnl|bosTau2|chr4 (57425135-57424366)
               

               
               1-764, gnl|Hg17|chr7 (139487722-139486609)
               


               
               255-636, gnl|bosTau2|chr11 (28991506-28991116)
               

               
               255-636, gnl|Hg17|chr7 (139487114-139486736)
               

               
               255-636, gnl|Mm7|chr6 (39266980-39266616)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-764, gnl|bosTau2|chr4 (57425135-57424366)
               

               
               1-764, gnl|Hg17|chr7 (139487722-139486609)
               


               
               255-636, gnl|bosTau2|chr11 (28991506-28991116)
               

               
               255-636, gnl|Hg17|chr7 (139487114-139486736)
               

               
               255-636, gnl|Mm7|chr6 (39266980-39266616)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               sag (0.548145)
               

               
               cbe (0.478469)
               

               
               tra (0.369276)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               ecc (0.23007)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.548145)
               

               
               cbe (0.478469)
               

               
               tra (0.369276)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               ecc (0.23007)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

	1-764, gnl\|bosTau2\|chr4 (57425135-57424366)
	1-764, gnl\|Hg17\|chr7 (139487722-139486609)

	255-636, gnl\|bosTau2\|chr11 (28991506-28991116)
	255-636, gnl\|Hg17\|chr7 (139487114-139486736)
	255-636, gnl\|Mm7\|chr6 (39266980-39266616)

	sag (0.548145)
	cbe (0.478469)
	tra (0.369276)
	lyg (0.266205)
	thg (0.253582)
	ecc (0.23007)
	ill (0.175593)
	fhi (0.169578)
	pty (0.142714)
	kid (0.129735)
	spc (0.113366)