Non-Coding RNA Search

Ss1.1-Pey1-35G04.5

Sequence:


               
               GAGATGAGGGTAGAAGGAGGTGGGTCAATGTGTTTCCCTTGACGTTACAGTCATCACCCC
TGGAAAAGTTCTGCAGGAACCATACGAAGGACCAGAGACCAAGGCTGGCTGCCTCTTAGA
AGAAATAAAAACCCAGATCCAGCGTGAAGTGAGTTGATGGCAATTGAGCCGCCCACGCGT
CCGCCCACGCGTCCGCGGACGCGTGGGTCCAGGGCTAACTCCAGCTGCCTTCGGCCACAT
CAGGCCCCCAACTCCATCTCAAGGCTTAAAGAAAAGAAACGAGGAGGCATCCAATCACTG
GCATCTCAAAAAAGAAAAAGTCCAAGTGGAATTTTATTTCTGGACTGAAATGGATGGAGA
AGCCCCAGCGAAGCCTGGAGAACAAAAGGTCACCAATCCGAGGGCAGGATGGAAAATGCC
CTTCCTCCTCTTCCTGTGCCTGCTGCAGGCCGCAAATGCATTGAAGGGACCGAGGCTGGT
GTCCGGGGAGCCTGGGGGAGCTGTCACCATCCAGTGCAAATATGGCCCCTTGCTCATCAG
CAGCCACCAGAGGAAGTACTGGTGCCGCCTAAACCCCTCAACAGGGCTCTGTCACACCAT
CGTGTCCACCAACCGCTACACTCGCCCTTACTACCATGGCCGCGTGGCCCTAGAGGACTT
CCCGAAAAAAGGCTTGTTTGTGGTGAGGCTGTGCCAGCTGTCCCCGGAGGACGTGGGCTA
CTACCGCTGTGGCATTGGGAACAACAACAACCTGCTGTTCTTCAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATGAGGGTAGAAGGAGGTGGGTCAATGTGTTTCCCTTGACGTTACAGTCATCACCCC
TGGAAAAGTTCTGCAGGAACCATACGAAGGACCAGAGACCAAGGCTGGCTGCCTCTTAGA
AGAAATAAAAACCCAGATCCAGCGTGAAGTGAGTTGATGGCAATTGAGCCGCCCACGCGT
CCGCCCACGCGTCCGCGGACGCGTGGGTCCAGGGCTAACTCCAGCTGCCTTCGGCCACAT
CAGGCCCCCAACTCCATCTCAAGGCTTAAAGAAAAGAAACGAGGAGGCATCCAATCACTG
GCATCTCAAAAAAGAAAAAGTCCAAGTGGAATTTTATTTCTGGACTGAAATGGATGGAGA
AGCCCCAGCGAAGCCTGGAGAACAAAAGGTCACCAATCCGAGGGCAGGATGGAAAATGCC
CTTCCTCCTCTTCCTGTGCCTGCTGCAGGCCGCAAATGCATTGAAGGGACCGAGGCTGGT
GTCCGGGGAGCCTGGGGGAGCTGTCACCATCCAGTGCAAATATGGCCCCTTGCTCATCAG
CAGCCACCAGAGGAAGTACTGGTGCCGCCTAAACCCCTCAACAGGGCTCTGTCACACCAT
CGTGTCCACCAACCGCTACACTCGCCCTTACTACCATGGCCGCGTGGCCCTAGAGGACTT
CCCGAAAAAAGGCTTGTTTGTGGTGAGGCTGTGCCAGCTGTCCCCGGAGGACGTGGGCTA
CTACCGCTGTGGCATTGGGAACAACAACAACCTGCTGTTCTTCAACAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               666-768, + strand, RNAz p=0.889178

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               666-768, + strand, RNAz p=0.889178

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-390, gnl|bosTau2|chr16 (3931075-3931474)
               

               
               1-390, gnl|Hg17|chr1 (203532203-203531825)
               

               
               1-390, gnl|Mm7|chr1 (130704687-130705072)
               


               
               443-768, gnl|bosTau2|chr16 (3939627-3939951)
               

               
               443-768, gnl|canFam2|chr7 (9056532-9056993)
               

               
               443-768, gnl|dasNov1|scaffold_11315 (57544-57098)
               

               
               443-768, gnl|echTel1|scaffold_307584 (80016-80459)
               

               
               443-768, gnl|hg17|chr1 (203523887-203524334)
               

               
               443-768, gnl|Hg17|chr1 (203524297-203523973)
               

               
               443-768, gnl|loxAfr1|scaffold_5057 (5595-5153)
               

               
               443-768, gnl|mm7|chr1 (130715863-130715426)
               

               
               443-768, gnl|Mm7|chr1 (130715447-130715771)
               

               
               443-768, gnl|monDom2|scaffold_13 (9240094-9240541)
               

               
               443-768, gnl|oryCun1|scaffold_210184 (244173-244619)
               

               
               443-768, gnl|panTro1|chr1 (187105604-187106051)
               

               
               443-768, gnl|rheMac2|chr1 (163393215-163392768)
               

               
               443-768, gnl|rn3|chr13 (43775351-43774869)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-390, gnl|bosTau2|chr16 (3931075-3931474)
               

               
               1-390, gnl|Hg17|chr1 (203532203-203531825)
               

               
               1-390, gnl|Mm7|chr1 (130704687-130705072)
               


               
               443-768, gnl|bosTau2|chr16 (3939627-3939951)
               

               
               443-768, gnl|canFam2|chr7 (9056532-9056993)
               

               
               443-768, gnl|dasNov1|scaffold_11315 (57544-57098)
               

               
               443-768, gnl|echTel1|scaffold_307584 (80016-80459)
               

               
               443-768, gnl|hg17|chr1 (203523887-203524334)
               

               
               443-768, gnl|Hg17|chr1 (203524297-203523973)
               

               
               443-768, gnl|loxAfr1|scaffold_5057 (5595-5153)
               

               
               443-768, gnl|mm7|chr1 (130715863-130715426)
               

               
               443-768, gnl|Mm7|chr1 (130715447-130715771)
               

               
               443-768, gnl|monDom2|scaffold_13 (9240094-9240541)
               

               
               443-768, gnl|oryCun1|scaffold_210184 (244173-244619)
               

               
               443-768, gnl|panTro1|chr1 (187105604-187106051)
               

               
               443-768, gnl|rheMac2|chr1 (163393215-163392768)
               

               
               443-768, gnl|rn3|chr13 (43775351-43774869)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-390, gnl\|bosTau2\|chr16 (3931075-3931474)
	1-390, gnl\|Hg17\|chr1 (203532203-203531825)
	1-390, gnl\|Mm7\|chr1 (130704687-130705072)

	443-768, gnl\|bosTau2\|chr16 (3939627-3939951)
	443-768, gnl\|canFam2\|chr7 (9056532-9056993)
	443-768, gnl\|dasNov1\|scaffold_11315 (57544-57098)
	443-768, gnl\|echTel1\|scaffold_307584 (80016-80459)
	443-768, gnl\|hg17\|chr1 (203523887-203524334)
	443-768, gnl\|Hg17\|chr1 (203524297-203523973)
	443-768, gnl\|loxAfr1\|scaffold_5057 (5595-5153)
	443-768, gnl\|mm7\|chr1 (130715863-130715426)
	443-768, gnl\|Mm7\|chr1 (130715447-130715771)
	443-768, gnl\|monDom2\|scaffold_13 (9240094-9240541)
	443-768, gnl\|oryCun1\|scaffold_210184 (244173-244619)
	443-768, gnl\|panTro1\|chr1 (187105604-187106051)
	443-768, gnl\|rheMac2\|chr1 (163393215-163392768)
	443-768, gnl\|rn3\|chr13 (43775351-43774869)