Non-Coding RNA Search

Ss1.1-Pey1-37A03.5

Sequence:


               
               TAGTGAAGATAACACTGTCATTTCTTCTGATGTACTTGAGACCGTTTCCAAATCAGCTCT
TCCATCCCACACCATTCAAGCATCAGAAGAGCAGAGCTCAACACCAACACCAGTGAAAAA
GTCTAGCAAACTGAGGCAGCAAATAGATATCAAAGCGGAACTGGAGAAGCGGCAAGGAGG
AAAGCAGCTCCTCAACCTCGTGGTCATTGGTCATGTTGATGCTGGGAAAAGTACTCTGAT
GGGCCATTTGCTTTATCTTCTGGGTAATGTAAACAAAAGAACTATGCATAAGTATGAACA
AGAGTCTAAGAAGGCTGGCAAAGCTTCATTTGCATATGCATGGGTCTTGGATGAGACTGG
AGAAGAAAGGGAAAGGGGAGTAACAATGGATGTTGGTATGACAAAGTTTGAGACTACAAC
CAAAGTTATTACATTAATGGATGCTCCAGGCCATAAGGATTTCATTCCAAATATGATTAC
AGGAGCAGCCCAGGCAGATGTAGCTGTTTTAGTTGTAGATGCCAGCAGGGGAGAGTTTGA
AGCCGGATTTGAGACTGGGGGACAGACACGAGAACATGGCCTCTTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTGAAGATAACACTGTCATTTCTTCTGATGTACTTGAGACCGTTTCCAAATCAGCTCT
TCCATCCCACACCATTCAAGCATCAGAAGAGCAGAGCTCAACACCAACACCAGTGAAAAA
GTCTAGCAAACTGAGGCAGCAAATAGATATCAAAGCGGAACTGGAGAAGCGGCAAGGAGG
AAAGCAGCTCCTCAACCTCGTGGTCATTGGTCATGTTGATGCTGGGAAAAGTACTCTGAT
GGGCCATTTGCTTTATCTTCTGGGTAATGTAAACAAAAGAACTATGCATAAGTATGAACA
AGAGTCTAAGAAGGCTGGCAAAGCTTCATTTGCATATGCATGGGTCTTGGATGAGACTGG
AGAAGAAAGGGAAAGGGGAGTAACAATGGATGTTGGTATGACAAAGTTTGAGACTACAAC
CAAAGTTATTACATTAATGGATGCTCCAGGCCATAAGGATTTCATTCCAAATATGATTAC
AGGAGCAGCCCAGGCAGATGTAGCTGTTTTAGTTGTAGATGCCAGCAGGGGAGAGTTTGA
AGCCGGATTTGAGACTGGGGGACAGACACGAGAACATGGCCTCTTGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874494|ref|XP_593186.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874494|ref|XP_593186.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               411-530, - strand, RNAz p=0.770997

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               411-530, - strand, RNAz p=0.770997

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               171-587, gnl|bosTau2|chr11 (67285709-67285296)
               

               
               171-587, gnl|Hg17|chr9 (132924430-132924844)
               

               
               171-587, gnl|Mm7|chr2 (40563066-40563455)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               171-587, gnl|bosTau2|chr11 (67285709-67285296)
               

               
               171-587, gnl|Hg17|chr9 (132924430-132924844)
               

               
               171-587, gnl|Mm7|chr2 (40563066-40563455)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)

	171-587, gnl\|bosTau2\|chr11 (67285709-67285296)
	171-587, gnl\|Hg17\|chr9 (132924430-132924844)
	171-587, gnl\|Mm7\|chr2 (40563066-40563455)