Ss1.1-Pey1-38C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGCAGCGCGGCCGCCGCGAGAGCCCGGAGCGCGCACGGGGAGGGAGGAAGGAGAAGAG AGGGAGGAGGGGAGACGGACAACATGGGGCTGGAGGCGGCGCGCGAGCTGGACTGCGCGG CGCTGGGCGCTCTCCTGCGGGAGCCGCGGGAGGCCGAGCGCACGCTGCTGCTCGACTGCC GCCCCTTCTTGGCCTTCTGTCGCCGCCACGTGCGCACCGCACGGCCGGTGCCCTGGAACG CGCTGCTGCGGCGCCGCGCGAGCGGCTCGCCCGCCTCCGCCCTCGCCTGCCTGCTGCCCG ACCGCGCGCTGCGGGCGCGCCTGGCCCGCGGGGAGCTGGCGCGGGCCGTGGTGCTGGATG AAGGCAGCGCCTCGGTGGCCGAGCTCCCGCCCGACGGTCCAGCCCACGCTCTGCTCGCCG CGCTCCTGCACGAGACCCGCGCCGGGCCCACCCTTGTGTACTTCCTGCCAGGAGGCTTCG ATGGCTTCCAGGCCTGCTGCCCCGATCTGTGCTCTGAGTCCCCCGCCCTGCCAATGCTGC CCGAAAACAGCCGCCCCGACCCCAGGGCTCCCTTGTATGACCAGGGTGGCCCTGTGGAGA TCTTGCCCTACCTGTTCCTGGGCAGCTGCAGCCACTCATCTGACCTGCAGGGGCTGCAGG CCTGTGGCATCACTGCGGTCCTCAATGTCTCGGCCAGCTGCCCCAACCACTTTGAGGGCC TGCTGCGCTACAAAAGCATCCCTGTGGAGGACAACCAGATGGTGGAGATCAGTGCCTGGT TCCAGGAGGCTATCGGCTTCATTGATTCGGTGAAGAACAGTGGAGGCCGGGTGCTAGTAC ATTGCCAGGCAGGCATCTCACGCTCCGCCACCATCTGCCTGGCGTACCTGATACAGAACC GTCGAGTGCGTCTAGATGAGGCCTTTGACTTTGTTAAACAACGCAGGGGAGTCATCTCCC CCAACTTCAGTTTCATGGGGCAGCTGCTGCAGTTTGAGACTCAGGTGCTGTGTCACTGAG GCTGGGCGCCACCATGTTGGCTCCCCCAGGGCCCAGGAGCACAGGGCTACCTGATTCCTG GGGACAGCTGGGGCCCCAGTCCCCCACTGCACCCCCCACCTCAAGGAGAGCGGCCCCTTC CTTGGAGTTTGAAAAGCCCCAGGTGGAGGCGCTGGGGATACGGCAATGCTGGACTTTCTC ACCTGGTGCTCTTCTGCTAGGGGTTTGAGGGCTGGCCCTCAGTCCTCATCCTGGAAGGAG AATGGAGGCTGTTCTGCTTCCCTCTTCCTCCGTCCTCTGGCAGAAATGAACTGGACTCTA CACCCATGGATTCCCACTGGCCCCACCATGCCAGAGCCCTTGGAGGCCTGAGGGCTCCAA GGAATAAGCTGTGACAACCAGGAGCCCTGTCTGGGGTGGTCCACCCTGAGGCCTGGAGCC TGAGCCCTGCGCGGGGCTTGGGGAAGTAAGGCAGATGCCGTGTCTGGACCTCTTGGTTGC CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGAGTGTTTCACGCCTGTGTTGGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGCAGCGCGGCCGCCGCGAGAGCCCGGAGCGCGCACGGGGAGGGAGGAAGGAGAAGAG AGGGAGGAGGGGAGACGGACAACATGGGGCTGGAGGCGGCGCGCGAGCTGGACTGCGCGG CGCTGGGCGCTCTCCTGCGGGAGCCGCGGGAGGCCGAGCGCACGCTGCTGCTCGACTGCC GCCCCTTCTTGGCCTTCTGTCGCCGCCACGTGCGCACCGCACGGCCGGTGCCCTGGAACG CGCTGCTGCGGCGCCGCGCGAGCGGCTCGCCCGCCTCCGCCCTCGCCTGCCTGCTGCCCG ACCGCGCGCTGCGGGCGCGCCTGGCCCGCGGGGAGCTGGCGCGGGCCGTGGTGCTGGATG AAGGCAGCGCCTCGGTGGCCGAGCTCCCGCCCGACGGTCCAGCCCACGCTCTGCTCGCCG CGCTCCTGCACGAGACCCGCGCCGGGCCCACCCTTGTGTACTTCCTGCCAGGAGGCTTCG ATGGCTTCCAGGCCTGCTGCCCCGATCTGTGCTCTGAGTCCCCCGCCCTGCCAATGCTGC CCGAAAACAGCCGCCCCGACCCCAGGGCTCCCTTGTATGACCAGGGTGGCCCTGTGGAGA TCTTGCCCTACCTGTTCCTGGGCAGCTGCAGCCACTCATCTGACCTGCAGGGGCTGCAGG CCTGTGGCATCACTGCGGTCCTCAATGTCTCGGCCAGCTGCCCCAACCACTTTGAGGGCC TGCTGCGCTACAAAAGCATCCCTGTGGAGGACAACCAGATGGTGGAGATCAGTGCCTGGT TCCAGGAGGCTATCGGCTTCATTGATTCGGTGAAGAACAGTGGAGGCCGGGTGCTAGTAC ATTGCCAGGCAGGCATCTCACGCTCCGCCACCATCTGCCTGGCGTACCTGATACAGAACC GTCGAGTGCGTCTAGATGAGGCCTTTGACTTTGTTAAACAACGCAGGGGAGTCATCTCCC CCAACTTCAGTTTCATGGGGCAGCTGCTGCAGTTTGAGACTCAGGTGCTGTGTCACTGAG GCTGGGCGCCACCATGTTGGCTCCCCCAGGGCCCAGGAGCACAGGGCTACCTGATTCCTG GGGACAGCTGGGGCCCCAGTCCCCCACTGCACCCCCCACCTCAAGGAGAGCGGCCCCTTC CTTGGAGTTTGAAAAGCCCCAGGTGGAGGCGCTGGGGATACGGCAATGCTGGACTTTCTC ACCTGGTGCTCTTCTGCTAGGGGTTTGAGGGCTGGCCCTCAGTCCTCATCCTGGAAGGAG AATGGAGGCTGTTCTGCTTCCCTCTTCCTCCGTCCTCTGGCAGAAATGAACTGGACTCTA CACCCATGGATTCCCACTGGCCCCACCATGCCAGAGCCCTTGGAGGCCTGAGGGCTCCAA GGAATAAGCTGTGACAACCAGGAGCCCTGTCTGGGGTGGTCCACCCTGAGGCCTGGAGCC TGAGCCCTGCGCGGGGCTTGGGGAAGTAAGGCAGATGCCGTGTCTGGACCTCTTGGTTGC CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGAGTGTTTCACGCCTGTGTTGGCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 843-962, - strand, RNAz p=0.617313 | |
| 1043-1470, + strand, RNAz p=0.99996 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 843-962, - strand, RNAz p=0.617313 | |
| 1043-1470, + strand, RNAz p=0.99996 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_004418, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 3-507, gnl|bosTau2|chr11 (1782893-1783417) | |
| 3-507, gnl|Hg17|chr2 (96233038-96232554) | |
| 3-507, gnl|Mm7|chr2 (127077027-127077525) | |
| 582-802, gnl|bosTau2|chr20 (3119598-3119378) | |
| 582-802, gnl|canFam2|chr4 (42780772-42780514) | |
| 582-802, gnl|danRer3|chr11 (9490910-9490648) | |
| 582-802, gnl|dasNov1|scaffold_84931 (3981-4239) | |
| 582-802, gnl|echTel1|scaffold_316133 (2015-1776) | |
| 582-802, gnl|fr1|chrUn (158482291-158482546) | |
| 582-802, gnl|galGal2|chrUn (53055013-53054782) | |
| 582-802, gnl|hg17|chr5 (172129179-172129437) | |
| 582-802, gnl|Hg17|chr5 (172129406-172129186) | |
| 582-802, gnl|loxAfr1|scaffold_3893 (39076-39334) | |
| 582-802, gnl|mm7|chr17 (24691527-24691787) | |
| 582-802, gnl|Mm7|chr17 (24691754-24691534) | |
| 582-802, gnl|monDom2|scaffold_6 (27815143-27814894) | |
| 582-802, gnl|oryCun1|scaffold_174113 (19468-19209) | |
| 582-802, gnl|panTro1|chr4 (179453554-179453812) | |
| 582-802, gnl|rheMac2|chr6 (169161680-169161938) | |
| 582-802, gnl|rn3|chr10 (16945438-16945180) | |
| 582-802, gnl|tetNig1|chr1 (2061319-2061548) | |
| 582-802, gnl|xenTro1|scaffold_201 (1694693-1694934) | |
| 804-1509, gnl|bosTau2|chr11 (1784568-1785276) | |
| 804-1509, gnl|Hg17|chr2 (96231651-96230956) | |
| 804-1509, gnl|Mm7|chr2 (127078433-127079043) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-507, gnl|bosTau2|chr11 (1782893-1783417) | |
| 3-507, gnl|Hg17|chr2 (96233038-96232554) | |
| 3-507, gnl|Mm7|chr2 (127077027-127077525) | |
| 582-802, gnl|bosTau2|chr20 (3119598-3119378) | |
| 582-802, gnl|canFam2|chr4 (42780772-42780514) | |
| 582-802, gnl|danRer3|chr11 (9490910-9490648) | |
| 582-802, gnl|dasNov1|scaffold_84931 (3981-4239) | |
| 582-802, gnl|echTel1|scaffold_316133 (2015-1776) | |
| 582-802, gnl|fr1|chrUn (158482291-158482546) | |
| 582-802, gnl|galGal2|chrUn (53055013-53054782) | |
| 582-802, gnl|hg17|chr5 (172129179-172129437) | |
| 582-802, gnl|Hg17|chr5 (172129406-172129186) | |
| 582-802, gnl|loxAfr1|scaffold_3893 (39076-39334) | |
| 582-802, gnl|mm7|chr17 (24691527-24691787) | |
| 582-802, gnl|Mm7|chr17 (24691754-24691534) | |
| 582-802, gnl|monDom2|scaffold_6 (27815143-27814894) | |
| 582-802, gnl|oryCun1|scaffold_174113 (19468-19209) | |
| 582-802, gnl|panTro1|chr4 (179453554-179453812) | |
| 582-802, gnl|rheMac2|chr6 (169161680-169161938) | |
| 582-802, gnl|rn3|chr10 (16945438-16945180) | |
| 582-802, gnl|tetNig1|chr1 (2061319-2061548) | |
| 582-802, gnl|xenTro1|scaffold_201 (1694693-1694934) | |
| 804-1509, gnl|bosTau2|chr11 (1784568-1785276) | |
| 804-1509, gnl|Hg17|chr2 (96231651-96230956) | |
| 804-1509, gnl|Mm7|chr2 (127078433-127079043) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| med (0.232504) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cly (0.120642) | |
| pgl (0.118483) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.232504) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cly (0.120642) | |
| pgl (0.118483) |