Non-Coding RNA Search

Ss1.1-Pey1-40F03.5

Sequence:


               
               ACTATTCGTGGACCACCATTTAGGCCCTGGTGGCCTCTGGTGATCCACAGGCTCAATTGG
AGAACCACTGATCTCATGAAAAAACAGGATTTGTAAGACCTAAATTCAAGGGAGAGGACG
GACGCCTCGTGCTGTGAAGATGTAGGTGCTCCTGGTTTCAGATTCCTGCAGTGAGACGTG
TGAACCCCACCTACGGCTGCCTCAGTGCTGGGGGAGTCTTAGGTGGTTACTAAGGGCTTT
CTGAAGAAATGGATTCTGGTGAAGGGATGTGGCTTGGTTGGATGGGTGATGGGGAAATGT
GTTTCAGGAGTACAGGCAGCATAAGCAGTGCTGAAACTGGGAGGCTGTATGGTCTCATGG
ATGGGAAGTTTCTTTATCCCGCTGTGCTCCTGACTCCTTTTGTGATCATGGGCAAGTAAT
TACTTGGAATTTCAGTCTTCAAGTGCCTTCTTACTGCTTCGCAAAGTGGTGATCACTAAT
GTGACGGTGGGAAACTGCTGTGAGTGCCAGGGAACTGAATTTCTAAAAAAGCAGATTTTT
GGTTGCTTCAGACCTTTTAATCTCGTAACTTTTTCCAATTTTGATAGCATTATCTCTGGT
GATCTTATTAATAAATTAATACAGAGCATATCTTCATTTTGCCCCCTTTTTTGGAGGGGG
AGAAATAGTCGCACTAACATACATACCTATGTAAGTACACAGTCTGAAAAAATTACAGCT
TATGTAGTTTACTATGGGTTGGTGTTGGCAAAAAAAGATGAAATCTAGCAAAAGATTTTT
AAGCCTGAAATAATTTTGGACTCATATTACAGTATTTAAAATATGAAAGTGACTCATGTA
GTATTTGAAAAATGACTTTCATCTCATTGGGAATAATTACAGATGTACATCTATTTAACG
ATTTTAATTCTTTAAGACTATATAATGTTGAAGCTGAGTACTTCATACTTTAGAAAGTTA
GAACTGAAGCTTATGGGTGTTTAGACATAGCAATAATTAGGTAGAAACTTTAGAAGGTGA
TTCCATTTCAAAATGTCGGTCTTCATTTGTGCAAAGAAGTTCTGATCCATAATGCTACAG
ACAAACGTAACTTTTACAAAATGATTAAACTGGTTCCCTATAAACTTCCCCTTAATTTTT
TTTAATGTCTAGTCTTCTAGACAGTTGACAGATTGTACATAATTTACATCATTTAAAGTG
TAAGTTAAGTCATTTTTGACAGTTCTTATGAGATAAAGACCAAATTTTTAAATAATTATG
GAAGAAAGCAGTACTTTCGGGAAAGCTTCCTCTTGTATGTTACTGGAGAATATTTGCTGC
TAATACCAATTAGGGCAGGAATATTTCTTTTATAAAAATGAGCAGAAATGTGGAGAAAAC
CTTACATTCATCTTCACTGTCAGAATAGCACAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTATTCGTGGACCACCATTTAGGCCCTGGTGGCCTCTGGTGATCCACAGGCTCAATTGG
AGAACCACTGATCTCATGAAAAAACAGGATTTGTAAGACCTAAATTCAAGGGAGAGGACG
GACGCCTCGTGCTGTGAAGATGTAGGTGCTCCTGGTTTCAGATTCCTGCAGTGAGACGTG
TGAACCCCACCTACGGCTGCCTCAGTGCTGGGGGAGTCTTAGGTGGTTACTAAGGGCTTT
CTGAAGAAATGGATTCTGGTGAAGGGATGTGGCTTGGTTGGATGGGTGATGGGGAAATGT
GTTTCAGGAGTACAGGCAGCATAAGCAGTGCTGAAACTGGGAGGCTGTATGGTCTCATGG
ATGGGAAGTTTCTTTATCCCGCTGTGCTCCTGACTCCTTTTGTGATCATGGGCAAGTAAT
TACTTGGAATTTCAGTCTTCAAGTGCCTTCTTACTGCTTCGCAAAGTGGTGATCACTAAT
GTGACGGTGGGAAACTGCTGTGAGTGCCAGGGAACTGAATTTCTAAAAAAGCAGATTTTT
GGTTGCTTCAGACCTTTTAATCTCGTAACTTTTTCCAATTTTGATAGCATTATCTCTGGT
GATCTTATTAATAAATTAATACAGAGCATATCTTCATTTTGCCCCCTTTTTTGGAGGGGG
AGAAATAGTCGCACTAACATACATACCTATGTAAGTACACAGTCTGAAAAAATTACAGCT
TATGTAGTTTACTATGGGTTGGTGTTGGCAAAAAAAGATGAAATCTAGCAAAAGATTTTT
AAGCCTGAAATAATTTTGGACTCATATTACAGTATTTAAAATATGAAAGTGACTCATGTA
GTATTTGAAAAATGACTTTCATCTCATTGGGAATAATTACAGATGTACATCTATTTAACG
ATTTTAATTCTTTAAGACTATATAATGTTGAAGCTGAGTACTTCATACTTTAGAAAGTTA
GAACTGAAGCTTATGGGTGTTTAGACATAGCAATAATTAGGTAGAAACTTTAGAAGGTGA
TTCCATTTCAAAATGTCGGTCTTCATTTGTGCAAAGAAGTTCTGATCCATAATGCTACAG
ACAAACGTAACTTTTACAAAATGATTAAACTGGTTCCCTATAAACTTCCCCTTAATTTTT
TTTAATGTCTAGTCTTCTAGACAGTTGACAGATTGTACATAATTTACATCATTTAAAGTG
TAAGTTAAGTCATTTTTGACAGTTCTTATGAGATAAAGACCAAATTTTTAAATAATTATG
GAAGAAAGCAGTACTTTCGGGAAAGCTTCCTCTTGTATGTTACTGGAGAATATTTGCTGC
TAATACCAATTAGGGCAGGAATATTTCTTTTATAAAAATGAGCAGAAATGTGGAGAAAAC
CTTACATTCATCTTCACTGTCAGAATAGCACAAAAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               3-121, - strand, RNAz p=0.988682
               

               
               278-395, - strand, RNAz p=0.862193

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.988682
               

               
               278-395, - strand, RNAz p=0.862193

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               8-121, K0502F09-5N NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CA570163.1|), blast E-value=3.00018e-42, identity=94.74% 
               

               
               8-121, A0700C08-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CN660058.1|), blast E-value=3.00018e-42, identity=94.74% 
               

               
               8-121, A0708H01-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CN660705.1|), blast E-value=3.00018e-42, identity=94.74% 
               

               
               8-121, A0722G05-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CN661704.1|), blast E-value=3.00018e-42, identity=94.74% 
               

               
               8-121, A0730C03-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CN662190.1|), blast E-value=3.00018e-42, identity=94.74% 
               

               
               8-121, A0741G08-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CN662916.1|), blast E-value=3.00018e-42, identity=94.74%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               8-121, K0502F09-5N NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CA570163.1|), blast E-value=3.00018e-42, identity=94.74% 
               

               
               8-121, A0700C08-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CN660058.1|), blast E-value=3.00018e-42, identity=94.74% 
               

               
               8-121, A0708H01-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CN660705.1|), blast E-value=3.00018e-42, identity=94.74% 
               

               
               8-121, A0722G05-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CN661704.1|), blast E-value=3.00018e-42, identity=94.74% 
               

               
               8-121, A0730C03-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CN662190.1|), blast E-value=3.00018e-42, identity=94.74% 
               

               
               8-121, A0741G08-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) 
(gb|CN662916.1|), blast E-value=3.00018e-42, identity=94.74%

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-772, gnl|bosTau2|chr1 (1315317-1316108)
               

               
               3-772, gnl|Hg17|chr21 (33863969-33864741)
               

               
               3-772, gnl|Mm7|chr16 (91722527-91723263)
               


               
               792-1378, gnl|bosTau2|chr1 (1316106-1316707)
               

               
               792-1378, gnl|Hg17|chr21 (33864739-33865443)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-772, gnl|bosTau2|chr1 (1315317-1316108)
               

               
               3-772, gnl|Hg17|chr21 (33863969-33864741)
               

               
               3-772, gnl|Mm7|chr16 (91722527-91723263)
               


               
               792-1378, gnl|bosTau2|chr1 (1316106-1316707)
               

               
               792-1378, gnl|Hg17|chr21 (33864739-33865443)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	3-121, - strand, RNAz p=0.988682
	278-395, - strand, RNAz p=0.862193

	8-121, K0502F09-5N NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) (gb\|CA570163.1\|), blast E-value=3.00018e-42, identity=94.74%
	8-121, A0700C08-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) (gb\|CN660058.1\|), blast E-value=3.00018e-42, identity=94.74%
	8-121, A0708H01-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) (gb\|CN660705.1\|), blast E-value=3.00018e-42, identity=94.74%
	8-121, A0722G05-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) (gb\|CN661704.1\|), blast E-value=3.00018e-42, identity=94.74%
	8-121, A0730C03-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) (gb\|CN662190.1\|), blast E-value=3.00018e-42, identity=94.74%
	8-121, A0741G08-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) (gb\|CN662916.1\|), blast E-value=3.00018e-42, identity=94.74%

	3-772, gnl\|bosTau2\|chr1 (1315317-1316108)
	3-772, gnl\|Hg17\|chr21 (33863969-33864741)
	3-772, gnl\|Mm7\|chr16 (91722527-91723263)

	792-1378, gnl\|bosTau2\|chr1 (1316106-1316707)
	792-1378, gnl\|Hg17\|chr21 (33864739-33865443)