Non-Coding RNA Search

Ss1.1-Pey1-42F08.5

Sequence:


               
               CGGACGCGTGGGAGACGCCAGCAGCTAAACTGCGGAAAGATGTTTGGACCGCGCGCGGAG
GCCGAGGAGAAGGCAGGCTCCAGACAGCGGCTGCAGGTGAATGAATATAAGGAAAACCAA
AACATCGCTTATGTATCTCTGAGACCGGTACAAACTACAGTTTTAGGAAAAACAGCTAAG
GTGTATCTTGTCCCCTTTTCACTCAGTAACTACAAGCCGGACCAATTTACGCGCCCCAAA
TCCCTATTAGATAAGAATTCTAACAATGAAGTGGCATGTAAGAAATGTAAGAAGGCTGAA
ATAGAGAAAACCTGCAGAAAGATTCTAACTCCAAAGATGGAAGCCACATCTTCCAAGGCA
GAATCCACTTTGCAAAAATCATCCTTAGATGTTTATGCTGAAAGTAACAAGTGGCAATGC
AAGAGCACTTCAGATGCAGTGATTCTCAGTGCTGATGCGGAAAGCAGTCAGGATGGAGAC
AGTGATGAAGATACCACACCAGGCCTGGATGATTTTTCAGGATTGTCACCATATGAAAGG
AAGAGACTGAAGAACATATCAGAAAATGCAAACTTTTTTGCTTCTCTTCAGTTATCTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGACGCGTGGGAGACGCCAGCAGCTAAACTGCGGAAAGATGTTTGGACCGCGCGCGGAG
GCCGAGGAGAAGGCAGGCTCCAGACAGCGGCTGCAGGTGAATGAATATAAGGAAAACCAA
AACATCGCTTATGTATCTCTGAGACCGGTACAAACTACAGTTTTAGGAAAAACAGCTAAG
GTGTATCTTGTCCCCTTTTCACTCAGTAACTACAAGCCGGACCAATTTACGCGCCCCAAA
TCCCTATTAGATAAGAATTCTAACAATGAAGTGGCATGTAAGAAATGTAAGAAGGCTGAA
ATAGAGAAAACCTGCAGAAAGATTCTAACTCCAAAGATGGAAGCCACATCTTCCAAGGCA
GAATCCACTTTGCAAAAATCATCCTTAGATGTTTATGCTGAAAGTAACAAGTGGCAATGC
AAGAGCACTTCAGATGCAGTGATTCTCAGTGCTGATGCGGAAAGCAGTCAGGATGGAGAC
AGTGATGAAGATACCACACCAGGCCTGGATGATTTTTCAGGATTGTCACCATATGAAAGG
AAGAGACTGAAGAACATATCAGAAAATGCAAACTTTTTTGCTTCTCTTCAGTTATCTGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61873962|ref|XP_603814.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61873962|ref|XP_603814.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               254-413, - strand, RNAz p=0.988852
               

               
               262-417, - strand, RNAz p=0.886967

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-413, - strand, RNAz p=0.988852
               

               
               262-417, - strand, RNAz p=0.886967

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               95-508, gnl|bosTau2|chr21 (34545002-34545415)
               

               
               95-508, gnl|canFam2|chr30 (13554537-13554980)
               

               
               95-508, gnl|echTel1|scaffold_282561 (42546-42108)
               

               
               95-508, gnl|hg17|chr15 (41907375-41907807)
               

               
               95-508, gnl|Hg17|chr15 (41907453-41907857)
               

               
               95-508, gnl|loxAfr1|scaffold_15289 (43244-42819)
               

               
               95-508, gnl|mm7|chr2 (121251304-121251744)
               

               
               95-508, gnl|Mm7|chr2 (121251390-121251779)
               

               
               95-508, gnl|monDom2|scaffold_53 (10249858-10249452)
               

               
               95-508, gnl|oryCun1|scaffold_167311 (23296-23720)
               

               
               95-508, gnl|panTro1|chr16 (41817674-41818106)
               

               
               95-508, gnl|rheMac2|chr7 (22222807-22223236)
               

               
               95-508, gnl|rn3|chr3 (108189627-108190082)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-508, gnl|bosTau2|chr21 (34545002-34545415)
               

               
               95-508, gnl|canFam2|chr30 (13554537-13554980)
               

               
               95-508, gnl|echTel1|scaffold_282561 (42546-42108)
               

               
               95-508, gnl|hg17|chr15 (41907375-41907807)
               

               
               95-508, gnl|Hg17|chr15 (41907453-41907857)
               

               
               95-508, gnl|loxAfr1|scaffold_15289 (43244-42819)
               

               
               95-508, gnl|mm7|chr2 (121251304-121251744)
               

               
               95-508, gnl|Mm7|chr2 (121251390-121251779)
               

               
               95-508, gnl|monDom2|scaffold_53 (10249858-10249452)
               

               
               95-508, gnl|oryCun1|scaffold_167311 (23296-23720)
               

               
               95-508, gnl|panTro1|chr16 (41817674-41818106)
               

               
               95-508, gnl|rheMac2|chr7 (22222807-22223236)
               

               
               95-508, gnl|rn3|chr3 (108189627-108190082)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	254-413, - strand, RNAz p=0.988852
	262-417, - strand, RNAz p=0.886967

	95-508, gnl\|bosTau2\|chr21 (34545002-34545415)
	95-508, gnl\|canFam2\|chr30 (13554537-13554980)
	95-508, gnl\|echTel1\|scaffold_282561 (42546-42108)
	95-508, gnl\|hg17\|chr15 (41907375-41907807)
	95-508, gnl\|Hg17\|chr15 (41907453-41907857)
	95-508, gnl\|loxAfr1\|scaffold_15289 (43244-42819)
	95-508, gnl\|mm7\|chr2 (121251304-121251744)
	95-508, gnl\|Mm7\|chr2 (121251390-121251779)
	95-508, gnl\|monDom2\|scaffold_53 (10249858-10249452)
	95-508, gnl\|oryCun1\|scaffold_167311 (23296-23720)
	95-508, gnl\|panTro1\|chr16 (41817674-41818106)
	95-508, gnl\|rheMac2\|chr7 (22222807-22223236)
	95-508, gnl\|rn3\|chr3 (108189627-108190082)