Non-Coding RNA Search

Ss1.1-Pey1-45B04.5

Sequence:


               
               TTAGGGAACCAGAACCAGAGAAAGCAGTGGTTTCAGAATGGATTTAAAAGAAGAAAGGAG
TTCTGGGTAAATGTGATGCCCACCGACCAAAAGTGGGGCTGGACTTTTAGGAATCACAGC
TCCTAGAATTTTACCCCGAGGCTCCCAAGAGTCCTCTTAGAACTGGAACTACTTGTTTGG
GGTGGAGCATTGTATTGGTCATTTGGAGAATCTATCCAAGTGGGGGGGAGAGAGAGAGAG
AGAGAGAGAGAAAAAATCTTAGGTCCTTTGGTGGAAGGGTTTTGCTAGCGACCACAGGGC
AACATGACAGCTTCAGGCCCTGTCTACTGGCTGTTGGTACCCTGGATGCCAGCTCAGTGA
AATCCTGTGGTGAGGCTCTGTTTGTATTTTTATAACTAAACATTGAGAGAGGAGTCTGAA
CAACCCTGCTTTGCAACAAATTTGTGCAAGCGCTGCTATAGTCATTTTGAAGCTCATGCA
TATTTTAGCTCCATCCCTTATTTGTATACTTTTTTGTTATTTGTGAAAATGGACATTTTT
GAACATATTTATTTTTTTGCCACTTTTTCCTATTCTTTATTTAAAGACAAGCGATACTTT
CTTGATCATAAATATTTTGTAATGAAATACTTTCTTTTTCCTAGCGCTTTGTAGGTTCTT
GTATAGTTATATCGATGGCAATGTAGTTTGAATTTCAGTCTGTAAATAAGTTTTTGGCAA
ACAAATTTTTATTGTTTTAAAGAGTTTTGGATATTGGTAATTTTTGGGGGGTGACTTGGT
GGAGAGCCTTAAGGTTCTCTGTTTTTTTTAACTGCTGACAAAAAGTGGGATTTTTGTATA
GTGGATAAAATGAATTATTGAAAACGTGCCCATAGAAATTAATGGTAAGTGGGGTCTTTG
TAGATTCAGAAGTAGTTTTAACGTAGAAGGATGTAAATACAAATAATTCTAATTTCAAAG
GCATTTGAGGAAAAAAAATCCATTGTGACAATAAAACAATGATATGGTTAATCTAGAACT
TTATAAAGGGAGTACCCCAATAAAGAGGCTTCTCACCCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGGGAACCAGAACCAGAGAAAGCAGTGGTTTCAGAATGGATTTAAAAGAAGAAAGGAG
TTCTGGGTAAATGTGATGCCCACCGACCAAAAGTGGGGCTGGACTTTTAGGAATCACAGC
TCCTAGAATTTTACCCCGAGGCTCCCAAGAGTCCTCTTAGAACTGGAACTACTTGTTTGG
GGTGGAGCATTGTATTGGTCATTTGGAGAATCTATCCAAGTGGGGGGGAGAGAGAGAGAG
AGAGAGAGAGAAAAAATCTTAGGTCCTTTGGTGGAAGGGTTTTGCTAGCGACCACAGGGC
AACATGACAGCTTCAGGCCCTGTCTACTGGCTGTTGGTACCCTGGATGCCAGCTCAGTGA
AATCCTGTGGTGAGGCTCTGTTTGTATTTTTATAACTAAACATTGAGAGAGGAGTCTGAA
CAACCCTGCTTTGCAACAAATTTGTGCAAGCGCTGCTATAGTCATTTTGAAGCTCATGCA
TATTTTAGCTCCATCCCTTATTTGTATACTTTTTTGTTATTTGTGAAAATGGACATTTTT
GAACATATTTATTTTTTTGCCACTTTTTCCTATTCTTTATTTAAAGACAAGCGATACTTT
CTTGATCATAAATATTTTGTAATGAAATACTTTCTTTTTCCTAGCGCTTTGTAGGTTCTT
GTATAGTTATATCGATGGCAATGTAGTTTGAATTTCAGTCTGTAAATAAGTTTTTGGCAA
ACAAATTTTTATTGTTTTAAAGAGTTTTGGATATTGGTAATTTTTGGGGGGTGACTTGGT
GGAGAGCCTTAAGGTTCTCTGTTTTTTTTAACTGCTGACAAAAAGTGGGATTTTTGTATA
GTGGATAAAATGAATTATTGAAAACGTGCCCATAGAAATTAATGGTAAGTGGGGTCTTTG
TAGATTCAGAAGTAGTTTTAACGTAGAAGGATGTAAATACAAATAATTCTAATTTCAAAG
GCATTTGAGGAAAAAAAATCCATTGTGACAATAAAACAATGATATGGTTAATCTAGAACT
TTATAAAGGGAGTACCCCAATAAAGAGGCTTCTCACCCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               30-1022, gnl|bosTau2|chr25 (14428650-14427666)
               

               
               30-1022, gnl|Hg17|chr16 (15062403-15061421)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-1022, gnl|bosTau2|chr25 (14428650-14427666)
               

               
               30-1022, gnl|Hg17|chr16 (15062403-15061421)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               cbe (0.478469)
               

               
               isp (0.300752)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               isp (0.300752)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	30-1022, gnl\|bosTau2\|chr25 (14428650-14427666)
	30-1022, gnl\|Hg17\|chr16 (15062403-15061421)

	cbe (0.478469)
	isp (0.300752)
	sug (0.254582)
	ese (0.253004)
	rec (0.17307)
	eye (0.170503)
	fat (0.147427)
	ski (0.146735)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	ova (0.129132)
	ebs (0.118301)
	ldo (0.0970026)