Ss1.1-Pey1-45D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATCTCAGCTTGCAGTTCTATCAGGCACATAGCAGGGAGGCTACTCCAGCCATAACTAA GCCCTGTTCTCTGTGACGATGACAGTGAAAACCGAGGCTGCTAGGAACACACTCACTTAC TCCAGAATGAGGGGAATGGTAGCAATTCTCATCGCTTTCATGAAACAGAGAAGGATGGGC CTGAACGACTTTATTCAGAAGATTGCCAATAATTCCTATGCATGCAAACACTCTGAAGTT CAGTCCATTTTGAAAATCTCTCAACCTCAGGAGCCTGAGCTTATGAATGCCAACCCTTCT CCTCCTCCAAGTCCTTCTCAGCAAATCAACCTGGGCCCATCTTCCAATCCTCATGCTAAA CCGTCTGACTTTCACTTCTTGAAAGTGATTGGGAAGGGCAGTTTTGGAAAGGTTCTTCTA GCAAGACACAAAGCAGAAGAAGCATTCTATGCAGTCAAAGTTTTACAAAAGAAGGCGATC CTGAAAAAGAAGGAGGAAAAGCACATTATGTCGGAGCGGAATGTTCTCCTGAAGAATGTG AAACACCCTTTCCTGGTGGGCCTTCATTTCTCTTTCCAGACTGCTGACAAACTGTACTTT GTCCTAGACTACATTAACGGTGGAGAGTTGTTCTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATCTCAGCTTGCAGTTCTATCAGGCACATAGCAGGGAGGCTACTCCAGCCATAACTAA GCCCTGTTCTCTGTGACGATGACAGTGAAAACCGAGGCTGCTAGGAACACACTCACTTAC TCCAGAATGAGGGGAATGGTAGCAATTCTCATCGCTTTCATGAAACAGAGAAGGATGGGC CTGAACGACTTTATTCAGAAGATTGCCAATAATTCCTATGCATGCAAACACTCTGAAGTT CAGTCCATTTTGAAAATCTCTCAACCTCAGGAGCCTGAGCTTATGAATGCCAACCCTTCT CCTCCTCCAAGTCCTTCTCAGCAAATCAACCTGGGCCCATCTTCCAATCCTCATGCTAAA CCGTCTGACTTTCACTTCTTGAAAGTGATTGGGAAGGGCAGTTTTGGAAAGGTTCTTCTA GCAAGACACAAAGCAGAAGAAGCATTCTATGCAGTCAAAGTTTTACAAAAGAAGGCGATC CTGAAAAAGAAGGAGGAAAAGCACATTATGTCGGAGCGGAATGTTCTCCTGAAGAATGTG AAACACCCTTTCCTGGTGGGCCTTCATTTCTCTTTCCAGACTGCTGACAAACTGTACTTT GTCCTAGACTACATTAACGGTGGAGAGTTGTTCTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 494-612, + strand, RNAz p=0.588362 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 494-612, + strand, RNAz p=0.588362 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 307-413, gnl|bosTau2|chr9 (40492231-40492125) | |
| 307-413, gnl|canFam2|chr1 (30129902-30130025) | |
| 307-413, gnl|danRer3|chr23 (47544102-47543989) | |
| 307-413, gnl|dasNov1|scaffold_1553 (39315-39421) | |
| 307-413, gnl|echTel1|scaffold_302863 (3226-3347) | |
| 307-413, gnl|fr1|chrUn (271894259-271894372) | |
| 307-413, gnl|galGal2|chr3 (55102062-55101930) | |
| 307-413, gnl|hg17|chr6 (134536291-134536418) | |
| 307-413, gnl|Hg17|chr6 (134536397-134536291) | |
| 307-413, gnl|loxAfr1|scaffold_24773 (12424-12540) | |
| 307-413, gnl|mm7|chr10 (21728743-21728623) | |
| 307-413, gnl|Mm7|chr10 (21728635-21728741) | |
| 307-413, gnl|monDom2|scaffold_0 (76800455-76800330) | |
| 307-413, gnl|oryCun1|scaffold_73302 (4-114) | |
| 307-413, gnl|panTro1|chr5 (137178343-137178470) | |
| 307-413, gnl|rheMac2|chr4 (129682413-129682286) | |
| 307-413, gnl|rn3|chr1 (23508544-23508659) | |
| 307-413, gnl|tetNig1|chr14 (5805893-5806002) | |
| 307-413, gnl|xenTro1|scaffold_481 (788345-788459) | |
| 494-630, gnl|bosTau2|chr9 (40491840-40491704) | |
| 494-630, gnl|canFam2|chr1 (30129460-30129598) | |
| 494-630, gnl|danRer3|chr23 (47544424-47544286) | |
| 494-630, gnl|dasNov1|scaffold_1553 (39106-39233) | |
| 494-630, gnl|echTel1|scaffold_302863 (2766-2904) | |
| 494-630, gnl|fr1|chrUn (271893945-271894080) | |
| 494-630, gnl|galGal2|chr3 (55102854-55102716) | |
| 494-630, gnl|hg17|chr6 (134535847-134535985) | |
| 494-630, gnl|Hg17|chr6 (134535987-134535851) | |
| 494-630, gnl|loxAfr1|scaffold_24773 (12211-12340) | |
| 494-630, gnl|mm7|chr10 (21729222-21729066) | |
| 494-630, gnl|Mm7|chr10 (21729062-21729198) | |
| 494-630, gnl|monDom2|scaffold_0 (76800881-76800743) | |
| 494-630, gnl|oryCun1|scaffold_198383 (16786-16927) | |
| 494-630, gnl|panTro1|chr5 (137177898-137178036) | |
| 494-630, gnl|rheMac2|chr4 (129682859-129682721) | |
| 494-630, gnl|rn3|chr1 (23508094-23508251) | |
| 494-630, gnl|tetNig1|chr14 (5805583-5805721) | |
| 494-630, gnl|xenTro1|scaffold_481 (787995-788133) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 307-413, gnl|bosTau2|chr9 (40492231-40492125) | |
| 307-413, gnl|canFam2|chr1 (30129902-30130025) | |
| 307-413, gnl|danRer3|chr23 (47544102-47543989) | |
| 307-413, gnl|dasNov1|scaffold_1553 (39315-39421) | |
| 307-413, gnl|echTel1|scaffold_302863 (3226-3347) | |
| 307-413, gnl|fr1|chrUn (271894259-271894372) | |
| 307-413, gnl|galGal2|chr3 (55102062-55101930) | |
| 307-413, gnl|hg17|chr6 (134536291-134536418) | |
| 307-413, gnl|Hg17|chr6 (134536397-134536291) | |
| 307-413, gnl|loxAfr1|scaffold_24773 (12424-12540) | |
| 307-413, gnl|mm7|chr10 (21728743-21728623) | |
| 307-413, gnl|Mm7|chr10 (21728635-21728741) | |
| 307-413, gnl|monDom2|scaffold_0 (76800455-76800330) | |
| 307-413, gnl|oryCun1|scaffold_73302 (4-114) | |
| 307-413, gnl|panTro1|chr5 (137178343-137178470) | |
| 307-413, gnl|rheMac2|chr4 (129682413-129682286) | |
| 307-413, gnl|rn3|chr1 (23508544-23508659) | |
| 307-413, gnl|tetNig1|chr14 (5805893-5806002) | |
| 307-413, gnl|xenTro1|scaffold_481 (788345-788459) | |
| 494-630, gnl|bosTau2|chr9 (40491840-40491704) | |
| 494-630, gnl|canFam2|chr1 (30129460-30129598) | |
| 494-630, gnl|danRer3|chr23 (47544424-47544286) | |
| 494-630, gnl|dasNov1|scaffold_1553 (39106-39233) | |
| 494-630, gnl|echTel1|scaffold_302863 (2766-2904) | |
| 494-630, gnl|fr1|chrUn (271893945-271894080) | |
| 494-630, gnl|galGal2|chr3 (55102854-55102716) | |
| 494-630, gnl|hg17|chr6 (134535847-134535985) | |
| 494-630, gnl|Hg17|chr6 (134535987-134535851) | |
| 494-630, gnl|loxAfr1|scaffold_24773 (12211-12340) | |
| 494-630, gnl|mm7|chr10 (21729222-21729066) | |
| 494-630, gnl|Mm7|chr10 (21729062-21729198) | |
| 494-630, gnl|monDom2|scaffold_0 (76800881-76800743) | |
| 494-630, gnl|oryCun1|scaffold_198383 (16786-16927) | |
| 494-630, gnl|panTro1|chr5 (137177898-137178036) | |
| 494-630, gnl|rheMac2|chr4 (129682859-129682721) | |
| 494-630, gnl|rn3|chr1 (23508094-23508251) | |
| 494-630, gnl|tetNig1|chr14 (5805583-5805721) | |
| 494-630, gnl|xenTro1|scaffold_481 (787995-788133) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nje (0.16592) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| jej (0.0989218) |