Ss1.1-Pey1-46F06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAACCCAGAGGGAGATGCACAGCCATGAGGTCATTTAGGAGTTCGCTGTTCATCCTGGT CCTTCACCTTCTGGAAGGGGCTCAGAGTAACTCGCTCATCCAGCTGAATGGCAATGGCTA CGAGGGCATCGTCATTGCAATTGACCCCAACGTGCCAGAAGATGAAACACTCATTCAGAA TATAAAGGATATGGTGACCAAAGCATCTCCATATCTGTTTGAAGCTACGGAAAAAAGATT CTATTTCAAAAATGTTGCCATTTTGATTCCTGCAAGTTGGAAGGCAAAACCGGAATATGT GAAACCCAAACTTGAGACCTACAAAAATGCTGATGTTGTGGTTACTGAACCAAATCCTCC AGAAAATGATGGGCCCTATACAGAGCAGATGGGAAAGTGTGGAGAAAAGGGTGAAAAAAT TTATTTCACTCCTGACTTCGTAGCAGGGAAAAAGGTGCTTCAATATGGACCACAAGGAAG GGTATTTGTTCACGAATGGGCTCACCTGCGATGGGGCGTGTTTAATGAGTACAACAACGA GCAGAAGTTCTACTTATCCAACAAAAAGAACAAACCAGTGATATGTTCGGCAGACATCAG AGGTGACATCGGAGTACCGCAGTGCCAAGGAGGCAGCTGTGTCACCAAACGGTGCCGACT GGACGGAGTAACGGGGCTGTACCAGAAAGAGTGTGAATTCATACCCAATTCCCAGCAGAG CGAGAAGGCCTCCATAATGTATGCACAGAGCATTGAATCGGTGGTTGAATTCTGTAAAGA AAAAAACCACAATAAAGAAGCTCCAAACGACCAAAACCAAAAATGCAATCTCCGAAGCAC ATGGGAAGTGATCCAAGATTCTGAAGACTTTAAGAAAACCACTCCCATGACAACACAGCC ACCCGCGCCCACCTTCTCACTGCTGCAGATCGGACAGAGAATCGTGTGTCTAGTCCTCGA CAAGTCTGGAAGCATGACGGTTGGTGGCCGTCTTAAGCGACTGAATCAAGCAGGCAAACT CTTCCTTCTGCAGACAGTGGAGCAAGGGGCCTGGGTTGGGATGGTGGCATTTGACAGCGC TGCCTATGTAAAAAGTGAACTCGTCCAGATAAACAGCGCCGCGGAAAGAGACGCGCTTAC CCGCAGCTTACCCACAGCAGCCTCGGGAGGAACATCCATCTGCTCGGGGCTTCGCTCCGC ATTTACTGTGATCAAGAAGAAATACCCGACCGACGGATCTGAGATCGTGTTACTGACTGA CGGGGAGGACAACACGATAAGCGCGTGCTTCGCGGAGGTGAAGCAGAGCGGAGCCATCAT CCACACGGTCGCCCTCGGGCCCTCGGCAGCGAAGGAGCTGGAGGAGCTGTCGCAGATGAC AGGTGGTTTGCAGACATATGCTTCAGACCAGGCTGAGAACAACGGCCTCATTGACGCTTT CGGGGCCCTTTCGTCCGGGAACGGAGCTGTCTCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAACCCAGAGGGAGATGCACAGCCATGAGGTCATTTAGGAGTTCGCTGTTCATCCTGGT CCTTCACCTTCTGGAAGGGGCTCAGAGTAACTCGCTCATCCAGCTGAATGGCAATGGCTA CGAGGGCATCGTCATTGCAATTGACCCCAACGTGCCAGAAGATGAAACACTCATTCAGAA TATAAAGGATATGGTGACCAAAGCATCTCCATATCTGTTTGAAGCTACGGAAAAAAGATT CTATTTCAAAAATGTTGCCATTTTGATTCCTGCAAGTTGGAAGGCAAAACCGGAATATGT GAAACCCAAACTTGAGACCTACAAAAATGCTGATGTTGTGGTTACTGAACCAAATCCTCC AGAAAATGATGGGCCCTATACAGAGCAGATGGGAAAGTGTGGAGAAAAGGGTGAAAAAAT TTATTTCACTCCTGACTTCGTAGCAGGGAAAAAGGTGCTTCAATATGGACCACAAGGAAG GGTATTTGTTCACGAATGGGCTCACCTGCGATGGGGCGTGTTTAATGAGTACAACAACGA GCAGAAGTTCTACTTATCCAACAAAAAGAACAAACCAGTGATATGTTCGGCAGACATCAG AGGTGACATCGGAGTACCGCAGTGCCAAGGAGGCAGCTGTGTCACCAAACGGTGCCGACT GGACGGAGTAACGGGGCTGTACCAGAAAGAGTGTGAATTCATACCCAATTCCCAGCAGAG CGAGAAGGCCTCCATAATGTATGCACAGAGCATTGAATCGGTGGTTGAATTCTGTAAAGA AAAAAACCACAATAAAGAAGCTCCAAACGACCAAAACCAAAAATGCAATCTCCGAAGCAC ATGGGAAGTGATCCAAGATTCTGAAGACTTTAAGAAAACCACTCCCATGACAACACAGCC ACCCGCGCCCACCTTCTCACTGCTGCAGATCGGACAGAGAATCGTGTGTCTAGTCCTCGA CAAGTCTGGAAGCATGACGGTTGGTGGCCGTCTTAAGCGACTGAATCAAGCAGGCAAACT CTTCCTTCTGCAGACAGTGGAGCAAGGGGCCTGGGTTGGGATGGTGGCATTTGACAGCGC TGCCTATGTAAAAAGTGAACTCGTCCAGATAAACAGCGCCGCGGAAAGAGACGCGCTTAC CCGCAGCTTACCCACAGCAGCCTCGGGAGGAACATCCATCTGCTCGGGGCTTCGCTCCGC ATTTACTGTGATCAAGAAGAAATACCCGACCGACGGATCTGAGATCGTGTTACTGACTGA CGGGGAGGACAACACGATAAGCGCGTGCTTCGCGGAGGTGAAGCAGAGCGGAGCCATCAT CCACACGGTCGCCCTCGGGCCCTCGGCAGCGAAGGAGCTGGAGGAGCTGTCGCAGATGAC AGGTGGTTTGCAGACATATGCTTCAGACCAGGCTGAGAACAACGGCCTCATTGACGCTTT CGGGGCCCTTTCGTCCGGGAACGGAGCTGTCTCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 42-188, - strand, RNAz p=0.966851 | |
| 366-484, - strand, RNAz p=0.585831 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-188, - strand, RNAz p=0.966851 | |
| 366-484, - strand, RNAz p=0.585831 |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 3-188, gnl|bosTau2|chr3 (42321486-42321671) | |
| 3-188, gnl|canFam2|chr6 (64709400-64709241) | |
| 3-188, gnl|dasNov1|scaffold_30914 (1384-1224) | |
| 3-188, gnl|echTel1|scaffold_324846 (9305-9464) | |
| 3-188, gnl|galGal2|chr8 (16305021-16304891) | |
| 3-188, gnl|hg17|chr1 (86646615-86646775) | |
| 3-188, gnl|Hg17|chr1 (86646653-86646838) | |
| 3-188, gnl|loxAfr1|scaffold_20619 (18525-18685) | |
| 3-188, gnl|mm7|chr3 (144925853-144925707) | |
| 3-188, gnl|Mm7|chr3 (144925813-144925642) | |
| 3-188, gnl|monDom2|scaffold_16 (246765-246614) | |
| 3-188, gnl|oryCun1|scaffold_99246 (912-1059) | |
| 3-188, gnl|panTro1|chr1_random (79848688-79848848) | |
| 3-188, gnl|rheMac2|chr1 (89193983-89194143) | |
| 3-188, gnl|rn3|chr2 (243070920-243070775) | |
| 329-484, gnl|bosTau2|chr3 (42327698-42327854) | |
| 329-484, gnl|canFam2|chr6 (64704679-64704522) | |
| 329-484, gnl|danRer3|chr19 (56804312-56804472) | |
| 329-484, gnl|dasNov1|scaffold_138970 (2582-2739) | |
| 329-484, gnl|echTel1|scaffold_175565 (1001-1158) | |
| 329-484, gnl|galGal2|chr8 (16302909-16302749) | |
| 329-484, gnl|hg17|chr1 (86651427-86651584) | |
| 329-484, gnl|Hg17|chr1 (86651433-86651582) | |
| 329-484, gnl|loxAfr1|scaffold_20619 (22693-22850) | |
| 329-484, gnl|mm7|chr3 (144920509-144920352) | |
| 329-484, gnl|Mm7|chr3 (144920501-144920348) | |
| 329-484, gnl|monDom2|scaffold_16 (241709-241549) | |
| 329-484, gnl|oryCun1|scaffold_99246 (4980-5137) | |
| 329-484, gnl|panTro1|chr1_random (79853492-79853649) | |
| 329-484, gnl|rheMac2|chr1 (89198759-89198916) | |
| 329-484, gnl|rn3|chr2 (243065113-243064956) | |
| 583-756, gnl|bosTau2|chr3 (42334711-42334884) | |
| 583-756, gnl|canFam2|chr6 (64697459-64697217) | |
| 583-756, gnl|dasNov1|scaffold_4670 (74708-74467) | |
| 583-756, gnl|echTel1|scaffold_145497 (541-766) | |
| 583-756, gnl|hg17|chr1 (86659869-86660111) | |
| 583-756, gnl|Hg17|chr1 (86659909-86660082) | |
| 583-756, gnl|loxAfr1|scaffold_11911 (4323-4562) | |
| 583-756, gnl|mm7|chr3 (144911837-144911602) | |
| 583-756, gnl|Mm7|chr3 (144911799-144911623) | |
| 583-756, gnl|monDom2|scaffold_16 (232486-232236) | |
| 583-756, gnl|oryCun1|scaffold_178988 (50412-50170) | |
| 583-756, gnl|panTro1|chr1_random (79861975-79862217) | |
| 583-756, gnl|rheMac2|chr1 (89207217-89207459) | |
| 583-756, gnl|rn3|chr2 (243058893-243058654) | |
| 760-976, gnl|bosTau2|chr3 (42477154-42477376) | |
| 760-976, gnl|Hg17|chr1 (86820247-86820466) | |
| 760-976, gnl|Mm7|chr3 (144706738-144706516) | |
| 981-1211, gnl|bosTau2|chr3 (42341022-42341252) | |
| 981-1211, gnl|canFam2|chr6 (64693715-64693492) | |
| 981-1211, gnl|danRer3|chr19 (56805440-56805663) | |
| 981-1211, gnl|dasNov1|scaffold_4670 (71223-71000) | |
| 981-1211, gnl|echTel1|scaffold_324846 (22697-22920) | |
| 981-1211, gnl|galGal2|chr8 (16317605-16317408) | |
| 981-1211, gnl|hg17|chr1 (86664222-86664445) | |
| 981-1211, gnl|Hg17|chr1 (86664231-86664461) | |
| 981-1211, gnl|loxAfr1|scaffold_11911 (8282-8505) | |
| 981-1211, gnl|mm7|chr3 (144908920-144908697) | |
| 981-1211, gnl|Mm7|chr3 (144908909-144908679) | |
| 981-1211, gnl|monDom2|scaffold_16 (230639-230416) | |
| 981-1211, gnl|oryCun1|scaffold_178988 (47910-47687) | |
| 981-1211, gnl|panTro1|chr1_random (79866326-79866550) | |
| 981-1211, gnl|rheMac2|chr1 (89211964-89212187) | |
| 981-1211, gnl|rn3|chr2 (243056004-243055781) | |
| 981-1211, gnl|xenTro1|scaffold_74 (262773-262553) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-188, gnl|bosTau2|chr3 (42321486-42321671) | |
| 3-188, gnl|canFam2|chr6 (64709400-64709241) | |
| 3-188, gnl|dasNov1|scaffold_30914 (1384-1224) | |
| 3-188, gnl|echTel1|scaffold_324846 (9305-9464) | |
| 3-188, gnl|galGal2|chr8 (16305021-16304891) | |
| 3-188, gnl|hg17|chr1 (86646615-86646775) | |
| 3-188, gnl|Hg17|chr1 (86646653-86646838) | |
| 3-188, gnl|loxAfr1|scaffold_20619 (18525-18685) | |
| 3-188, gnl|mm7|chr3 (144925853-144925707) | |
| 3-188, gnl|Mm7|chr3 (144925813-144925642) | |
| 3-188, gnl|monDom2|scaffold_16 (246765-246614) | |
| 3-188, gnl|oryCun1|scaffold_99246 (912-1059) | |
| 3-188, gnl|panTro1|chr1_random (79848688-79848848) | |
| 3-188, gnl|rheMac2|chr1 (89193983-89194143) | |
| 3-188, gnl|rn3|chr2 (243070920-243070775) | |
| 329-484, gnl|bosTau2|chr3 (42327698-42327854) | |
| 329-484, gnl|canFam2|chr6 (64704679-64704522) | |
| 329-484, gnl|danRer3|chr19 (56804312-56804472) | |
| 329-484, gnl|dasNov1|scaffold_138970 (2582-2739) | |
| 329-484, gnl|echTel1|scaffold_175565 (1001-1158) | |
| 329-484, gnl|galGal2|chr8 (16302909-16302749) | |
| 329-484, gnl|hg17|chr1 (86651427-86651584) | |
| 329-484, gnl|Hg17|chr1 (86651433-86651582) | |
| 329-484, gnl|loxAfr1|scaffold_20619 (22693-22850) | |
| 329-484, gnl|mm7|chr3 (144920509-144920352) | |
| 329-484, gnl|Mm7|chr3 (144920501-144920348) | |
| 329-484, gnl|monDom2|scaffold_16 (241709-241549) | |
| 329-484, gnl|oryCun1|scaffold_99246 (4980-5137) | |
| 329-484, gnl|panTro1|chr1_random (79853492-79853649) | |
| 329-484, gnl|rheMac2|chr1 (89198759-89198916) | |
| 329-484, gnl|rn3|chr2 (243065113-243064956) | |
| 583-756, gnl|bosTau2|chr3 (42334711-42334884) | |
| 583-756, gnl|canFam2|chr6 (64697459-64697217) | |
| 583-756, gnl|dasNov1|scaffold_4670 (74708-74467) | |
| 583-756, gnl|echTel1|scaffold_145497 (541-766) | |
| 583-756, gnl|hg17|chr1 (86659869-86660111) | |
| 583-756, gnl|Hg17|chr1 (86659909-86660082) | |
| 583-756, gnl|loxAfr1|scaffold_11911 (4323-4562) | |
| 583-756, gnl|mm7|chr3 (144911837-144911602) | |
| 583-756, gnl|Mm7|chr3 (144911799-144911623) | |
| 583-756, gnl|monDom2|scaffold_16 (232486-232236) | |
| 583-756, gnl|oryCun1|scaffold_178988 (50412-50170) | |
| 583-756, gnl|panTro1|chr1_random (79861975-79862217) | |
| 583-756, gnl|rheMac2|chr1 (89207217-89207459) | |
| 583-756, gnl|rn3|chr2 (243058893-243058654) | |
| 760-976, gnl|bosTau2|chr3 (42477154-42477376) | |
| 760-976, gnl|Hg17|chr1 (86820247-86820466) | |
| 760-976, gnl|Mm7|chr3 (144706738-144706516) | |
| 981-1211, gnl|bosTau2|chr3 (42341022-42341252) | |
| 981-1211, gnl|canFam2|chr6 (64693715-64693492) | |
| 981-1211, gnl|danRer3|chr19 (56805440-56805663) | |
| 981-1211, gnl|dasNov1|scaffold_4670 (71223-71000) | |
| 981-1211, gnl|echTel1|scaffold_324846 (22697-22920) | |
| 981-1211, gnl|galGal2|chr8 (16317605-16317408) | |
| 981-1211, gnl|hg17|chr1 (86664222-86664445) | |
| 981-1211, gnl|Hg17|chr1 (86664231-86664461) | |
| 981-1211, gnl|loxAfr1|scaffold_11911 (8282-8505) | |
| 981-1211, gnl|mm7|chr3 (144908920-144908697) | |
| 981-1211, gnl|Mm7|chr3 (144908909-144908679) | |
| 981-1211, gnl|monDom2|scaffold_16 (230639-230416) | |
| 981-1211, gnl|oryCun1|scaffold_178988 (47910-47687) | |
| 981-1211, gnl|panTro1|chr1_random (79866326-79866550) | |
| 981-1211, gnl|rheMac2|chr1 (89211964-89212187) | |
| 981-1211, gnl|rn3|chr2 (243056004-243055781) | |
| 981-1211, gnl|xenTro1|scaffold_74 (262773-262553) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| col (0.390016) | |
| lin (0.291206) | |
| ill (0.175593) | |
| nje (0.16592) | |
| nco (0.161734) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| lin (0.291206) | |
| ill (0.175593) | |
| nje (0.16592) | |
| nco (0.161734) |