Ss1.1-Pey1-48C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGAAGAAGTATGTTACTGCTGCTCAGCGTCTAGAAGAGGCACAGAAATGCTTGAAGTT ATTAAAATCAAGAAAATGCTTTGATTTAAAAATATTGAAATCTCTCAGCATGGAGCTTAC AATACAGAAACAGAATATACTTTATCATCTTGGAGAAGAGTGGCAGAAGCTGATTGTATG GAAGTTCCCACCATCAAAAGATATCAGCAACTTGGAATCTTGCCTACAAACAGAACTTCA TTTATGCACTGAAGAGCCTCAGAAAGAAGAGAAGACCCCCATGTCACCAATCAGTTCTGT CCTTTTGGCATTTTCTCTTCTTGGGGAGCTAAACACCAAGCTTAAATCATTTGGTCAGAT GCTGCTGAAGTACATCCTTAGGCCTCTGGCATCTTGCCCTTCCCTTTTTGCTGTGATAGA GAGCCAGCCTAACATCATTATCATTCGCTTTGAATCTGTGATGACTGATTTGGAACATCC TTCACCATCTGAAGTTTTTGCAAAGATCAGACTGGTACTGGAAGTGGTCCAGAAACAACT TCTAGATTTGCCTCTTGATGCTGACCTAGAAAATGAAAAAACGTCTAAGATCATATTGGC TGAGATGCTTGGTGACATGATCTGGGAGGACTTATCTGAGTGCCTCATTAAAAATTGTTT GGTTTATTCTATCCCAACAAACAGCAGCAAATTACAGCAATATGAAGAGATCATACAATC CACTGAAGAATTTGAAAATGCCCTAAAGGAGATGAGGTTTTTAAAAGGAAATACAACTGA TTTGTTGAAATATGCACGAAATATCAATTCTCATTTTGCTAACAAGAAGTGTCAGGATGT GATTGTGGCAGCTAGAAACCTAATGACCTCTGAAATTCACAACACTGTGAAGATCACTCC TGCTTCTAAGATAAGTGTGCCAGACTTACCTAGTCCTGATGAAGATGACAAGCTACAAGT ACAGAAAGTATCTACAACGCAGTACAATGAAGTGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGAAGAAGTATGTTACTGCTGCTCAGCGTCTAGAAGAGGCACAGAAATGCTTGAAGTT ATTAAAATCAAGAAAATGCTTTGATTTAAAAATATTGAAATCTCTCAGCATGGAGCTTAC AATACAGAAACAGAATATACTTTATCATCTTGGAGAAGAGTGGCAGAAGCTGATTGTATG GAAGTTCCCACCATCAAAAGATATCAGCAACTTGGAATCTTGCCTACAAACAGAACTTCA TTTATGCACTGAAGAGCCTCAGAAAGAAGAGAAGACCCCCATGTCACCAATCAGTTCTGT CCTTTTGGCATTTTCTCTTCTTGGGGAGCTAAACACCAAGCTTAAATCATTTGGTCAGAT GCTGCTGAAGTACATCCTTAGGCCTCTGGCATCTTGCCCTTCCCTTTTTGCTGTGATAGA GAGCCAGCCTAACATCATTATCATTCGCTTTGAATCTGTGATGACTGATTTGGAACATCC TTCACCATCTGAAGTTTTTGCAAAGATCAGACTGGTACTGGAAGTGGTCCAGAAACAACT TCTAGATTTGCCTCTTGATGCTGACCTAGAAAATGAAAAAACGTCTAAGATCATATTGGC TGAGATGCTTGGTGACATGATCTGGGAGGACTTATCTGAGTGCCTCATTAAAAATTGTTT GGTTTATTCTATCCCAACAAACAGCAGCAAATTACAGCAATATGAAGAGATCATACAATC CACTGAAGAATTTGAAAATGCCCTAAAGGAGATGAGGTTTTTAAAAGGAAATACAACTGA TTTGTTGAAATATGCACGAAATATCAATTCTCATTTTGCTAACAAGAAGTGTCAGGATGT GATTGTGGCAGCTAGAAACCTAATGACCTCTGAAATTCACAACACTGTGAAGATCACTCC TGCTTCTAAGATAAGTGTGCCAGACTTACCTAGTCCTGATGAAGATGACAAGCTACAAGT ACAGAAAGTATCTACAACGCAGTACAATGAAGTGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 417-535, + strand, RNAz p=0.66887 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 417-535, + strand, RNAz p=0.66887 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 39-200, gnl|bosTau2|chr15 (10724431-10724270) | |
| 39-200, gnl|canFam2|chr5 (22514089-22513975) | |
| 39-200, gnl|dasNov1|scaffold_2928 (87107-87002) | |
| 39-200, gnl|echTel1|scaffold_325345 (28898-28784) | |
| 39-200, gnl|fr1|chrUn (196269502-196269615) | |
| 39-200, gnl|galGal2|chr24 (5140619-5140506) | |
| 39-200, gnl|hg17|chr11 (113136126-113136240) | |
| 39-200, gnl|Hg17|chr11 (113136302-113136141) | |
| 39-200, gnl|loxAfr1|scaffold_35426 (5441-5327) | |
| 39-200, gnl|mm7|chr9 (49033352-49033238) | |
| 39-200, gnl|Mm7|chr9 (49033174-49033335) | |
| 39-200, gnl|monDom2|scaffold_2 (127161007-127160893) | |
| 39-200, gnl|oryCun1|scaffold_202199 (98908-98794) | |
| 39-200, gnl|panTro1|chr9 (115138421-115138535) | |
| 39-200, gnl|rheMac2|chr14 (112237071-112237185) | |
| 39-200, gnl|rn3|chr8 (52340591-52340477) | |
| 39-200, gnl|tetNig1|chr7 (10208944-10209045) | |
| 39-200, gnl|xenTro1|scaffold_300 (602906-602804) | |
| 353-550, gnl|bosTau2|chr15 (10722214-10722017) | |
| 353-550, gnl|canFam2|chr5 (22516156-22516005) | |
| 353-550, gnl|dasNov1|scaffold_2928 (88727-88576) | |
| 353-550, gnl|echTel1|scaffold_325345 (33154-33003) | |
| 353-550, gnl|fr1|chrUn (196268768-196268930) | |
| 353-550, gnl|galGal2|chr24 (5141466-5141312) | |
| 353-550, gnl|hg17|chr11 (113133583-113133734) | |
| 353-550, gnl|Hg17|chr11 (113133786-113133589) | |
| 353-550, gnl|mm7|chr9 (49036334-49036184) | |
| 353-550, gnl|Mm7|chr9 (49036130-49036327) | |
| 353-550, gnl|monDom2|scaffold_2 (127165127-127164976) | |
| 353-550, gnl|oryCun1|scaffold_202199 (102241-102090) | |
| 353-550, gnl|panTro1|chr9 (115135846-115135997) | |
| 353-550, gnl|rheMac2|chr14 (112234514-112234662) | |
| 353-550, gnl|rn3|chr8 (52343259-52343109) | |
| 353-550, gnl|xenTro1|scaffold_300 (604494-604350) | |
| 708-892, gnl|bosTau2|chr15 (10713392-10713208) | |
| 708-892, gnl|canFam2|chr5 (22523049-22522845) | |
| 708-892, gnl|dasNov1|scaffold_64933 (1782-1963) | |
| 708-892, gnl|echTel1|scaffold_325345 (47219-47015) | |
| 708-892, gnl|fr1|chrUn (196268195-196268398) | |
| 708-892, gnl|galGal2|chr24 (5142424-5142233) | |
| 708-892, gnl|hg17|chr11 (113123455-113123659) | |
| 708-892, gnl|Hg17|chr11 (113123647-113123463) | |
| 708-892, gnl|mm7|chr9 (49040973-49040769) | |
| 708-892, gnl|Mm7|chr9 (49040779-49040963) | |
| 708-892, gnl|monDom2|scaffold_2 (127180056-127179852) | |
| 708-892, gnl|panTro1|chr9 (115125712-115125916) | |
| 708-892, gnl|rheMac2|chr14 (112224451-112224655) | |
| 708-892, gnl|rn3|chr8 (52349878-52349674) | |
| 708-892, gnl|tetNig1|chr7 (10207821-10208018) | |
| 708-892, gnl|xenTro1|scaffold_300 (606943-606761) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-200, gnl|bosTau2|chr15 (10724431-10724270) | |
| 39-200, gnl|canFam2|chr5 (22514089-22513975) | |
| 39-200, gnl|dasNov1|scaffold_2928 (87107-87002) | |
| 39-200, gnl|echTel1|scaffold_325345 (28898-28784) | |
| 39-200, gnl|fr1|chrUn (196269502-196269615) | |
| 39-200, gnl|galGal2|chr24 (5140619-5140506) | |
| 39-200, gnl|hg17|chr11 (113136126-113136240) | |
| 39-200, gnl|Hg17|chr11 (113136302-113136141) | |
| 39-200, gnl|loxAfr1|scaffold_35426 (5441-5327) | |
| 39-200, gnl|mm7|chr9 (49033352-49033238) | |
| 39-200, gnl|Mm7|chr9 (49033174-49033335) | |
| 39-200, gnl|monDom2|scaffold_2 (127161007-127160893) | |
| 39-200, gnl|oryCun1|scaffold_202199 (98908-98794) | |
| 39-200, gnl|panTro1|chr9 (115138421-115138535) | |
| 39-200, gnl|rheMac2|chr14 (112237071-112237185) | |
| 39-200, gnl|rn3|chr8 (52340591-52340477) | |
| 39-200, gnl|tetNig1|chr7 (10208944-10209045) | |
| 39-200, gnl|xenTro1|scaffold_300 (602906-602804) | |
| 353-550, gnl|bosTau2|chr15 (10722214-10722017) | |
| 353-550, gnl|canFam2|chr5 (22516156-22516005) | |
| 353-550, gnl|dasNov1|scaffold_2928 (88727-88576) | |
| 353-550, gnl|echTel1|scaffold_325345 (33154-33003) | |
| 353-550, gnl|fr1|chrUn (196268768-196268930) | |
| 353-550, gnl|galGal2|chr24 (5141466-5141312) | |
| 353-550, gnl|hg17|chr11 (113133583-113133734) | |
| 353-550, gnl|Hg17|chr11 (113133786-113133589) | |
| 353-550, gnl|mm7|chr9 (49036334-49036184) | |
| 353-550, gnl|Mm7|chr9 (49036130-49036327) | |
| 353-550, gnl|monDom2|scaffold_2 (127165127-127164976) | |
| 353-550, gnl|oryCun1|scaffold_202199 (102241-102090) | |
| 353-550, gnl|panTro1|chr9 (115135846-115135997) | |
| 353-550, gnl|rheMac2|chr14 (112234514-112234662) | |
| 353-550, gnl|rn3|chr8 (52343259-52343109) | |
| 353-550, gnl|xenTro1|scaffold_300 (604494-604350) | |
| 708-892, gnl|bosTau2|chr15 (10713392-10713208) | |
| 708-892, gnl|canFam2|chr5 (22523049-22522845) | |
| 708-892, gnl|dasNov1|scaffold_64933 (1782-1963) | |
| 708-892, gnl|echTel1|scaffold_325345 (47219-47015) | |
| 708-892, gnl|fr1|chrUn (196268195-196268398) | |
| 708-892, gnl|galGal2|chr24 (5142424-5142233) | |
| 708-892, gnl|hg17|chr11 (113123455-113123659) | |
| 708-892, gnl|Hg17|chr11 (113123647-113123463) | |
| 708-892, gnl|mm7|chr9 (49040973-49040769) | |
| 708-892, gnl|Mm7|chr9 (49040779-49040963) | |
| 708-892, gnl|monDom2|scaffold_2 (127180056-127179852) | |
| 708-892, gnl|panTro1|chr9 (115125712-115125916) | |
| 708-892, gnl|rheMac2|chr14 (112224451-112224655) | |
| 708-892, gnl|rn3|chr8 (52349878-52349674) | |
| 708-892, gnl|tetNig1|chr7 (10207821-10208018) | |
| 708-892, gnl|xenTro1|scaffold_300 (606943-606761) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.146284) | |
| eep (0.122564) |