Non-Coding RNA Search

Ss1.1-Pey1-48F10.5

Sequence:


               
               GTCCGACCCTGGTGGGCAAAGGGCGCTTTGCCGAGGTCTATAAGGCCAAGCTGAGGCAGA
ACACATCTGAGCAGTTCGAGACCGTGGCTGTCAAGATCTTCCCCTATGAGGAGTATGCCT
CCTGGAAGACAGAGAAGGACATCTTCTCGGACATCAACCTCAAGCACGAGAACATCCTGC
AGTTCCTGACAGCTGAGGAACGCAAGACAGAGCTGGGCAAGCAGTACTGGCTGATCACTG
CCTTCCACGCCAAGGGCAACCTGCAGGAGTACCTGACGCGCCACGTCATCAGCTGGGAGG
ACCTCCGCAGGCTGGGCGGCTCGCTGGCCCGTGGCATTGCACACCTGCACAGCGACCACA
CCCTGTGCGGCCGGCCCAAGATGCCCATCGTGCACAGGGACCTCAAGAGCTCCAACATCC
TGGTCAAAGGTGACCTCACCTGCTGCCTCTGTGACTTCGGCCTCTCCCTGCGGCTGGACC
CCACTCTGTCAGTGGATGACTTGGCCAACAGTGGGCAGGTGGGAACTGCAAGATACATGG
CTCCTGAAGTCCTAGAGTCCAGGATGAATTTGGAGAATGTTGAGTCCTTCAAGCAGACGG
ATGTCTACTCCATGGCTCTGGTGCTCTGGGAGATGACGTCTCGCTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCGACCCTGGTGGGCAAAGGGCGCTTTGCCGAGGTCTATAAGGCCAAGCTGAGGCAGA
ACACATCTGAGCAGTTCGAGACCGTGGCTGTCAAGATCTTCCCCTATGAGGAGTATGCCT
CCTGGAAGACAGAGAAGGACATCTTCTCGGACATCAACCTCAAGCACGAGAACATCCTGC
AGTTCCTGACAGCTGAGGAACGCAAGACAGAGCTGGGCAAGCAGTACTGGCTGATCACTG
CCTTCCACGCCAAGGGCAACCTGCAGGAGTACCTGACGCGCCACGTCATCAGCTGGGAGG
ACCTCCGCAGGCTGGGCGGCTCGCTGGCCCGTGGCATTGCACACCTGCACAGCGACCACA
CCCTGTGCGGCCGGCCCAAGATGCCCATCGTGCACAGGGACCTCAAGAGCTCCAACATCC
TGGTCAAAGGTGACCTCACCTGCTGCCTCTGTGACTTCGGCCTCTCCCTGCGGCTGGACC
CCACTCTGTCAGTGGATGACTTGGCCAACAGTGGGCAGGTGGGAACTGCAAGATACATGG
CTCCTGAAGTCCTAGAGTCCAGGATGAATTTGGAGAATGTTGAGTCCTTCAAGCAGACGG
ATGTCTACTCCATGGCTCTGGTGCTCTGGGAGATGACGTCTCGCTGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38374001|gb|AAR19223.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38374001|gb|AAR19223.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               6-204, + strand, RNAz p=0.956338

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-204, + strand, RNAz p=0.956338

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-523, gnl|bosTau2|chr22 (3315194-3314677)
               

               
               6-523, gnl|Hg17|chr3 (30688421-30688938)
               

               
               6-523, gnl|Mm7|chr9 (115782343-115781826)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-523, gnl|bosTau2|chr22 (3315194-3314677)
               

               
               6-523, gnl|Hg17|chr3 (30688421-30688938)
               

               
               6-523, gnl|Mm7|chr9 (115782343-115781826)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	6-523, gnl\|bosTau2\|chr22 (3315194-3314677)
	6-523, gnl\|Hg17\|chr3 (30688421-30688938)
	6-523, gnl\|Mm7\|chr9 (115782343-115781826)