Non-Coding RNA Search

Ss1.1-Pey1-50A05.5

Sequence:


               
               ATGCACACCACCAACATTCTAGGCATTACGCAGGCCAGCAACTCCCAGCTGAACGCTATG
GCTCATCAGATTCAAGAAATGTTCCCCCAGGTTCCCTACCACCTCGTACTGCAGGACCTC
CAGCTGACACGCTCAGTCGAAATAACAACAGACAACATTTTAGAAGGACGGATTCAAGTA
CCTTTTCCCACGCAGAGGTCAGAGAGCATCAGACCTGCATTGAACAGTCCTGCAGAAAGG
CCGAACGGCGACCAGGAGGAGGGGGAAGCTTCTGCCCAGACGGAGCGTGTGCCGCTGGAC
CTCAGTCCTCGGCTGGAGGAGGCGTTGGACTTCAGCGAGCTGGAGGCGGAGCCCAGTGAG
GGTGAGGACTTCGAGGCCCGCGGGAGCCGCTTCTCCAAGTCTGCCGACGAGAGGCAGCGC
ATGTTGGTGCAGCGTAAGGATGACCTCCTGCAGCAAGCTCGGAGGCGTTTCTTGAACAGA
AGTTCTGAGGATGACTCGGCCTCGGAGAGCCCCCTCCCCTCGGAAGGCGCGACCTCTGAT
CCTGTGACGCTGCGCCGAAGGATGCTGGCTGCCGCCGCGGAACGGAGACTCCAGAAGCAG
CAGACGTCCTAGCACTTCCTCAGCTGCCTCCTCCTGAGCTGCGCGCCCACCCAAGAGGCC
TGTCCCCAGTTCTGCCTGCTGTTCGAAGACGTGGGCTTGACTGCATTGCCGCTGTATAAA
GCATGTGGTCTTAATAGTGTTTGGACAGCTGACAAATTTAATCCTTTTTTGTAATACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCACACCACCAACATTCTAGGCATTACGCAGGCCAGCAACTCCCAGCTGAACGCTATG
GCTCATCAGATTCAAGAAATGTTCCCCCAGGTTCCCTACCACCTCGTACTGCAGGACCTC
CAGCTGACACGCTCAGTCGAAATAACAACAGACAACATTTTAGAAGGACGGATTCAAGTA
CCTTTTCCCACGCAGAGGTCAGAGAGCATCAGACCTGCATTGAACAGTCCTGCAGAAAGG
CCGAACGGCGACCAGGAGGAGGGGGAAGCTTCTGCCCAGACGGAGCGTGTGCCGCTGGAC
CTCAGTCCTCGGCTGGAGGAGGCGTTGGACTTCAGCGAGCTGGAGGCGGAGCCCAGTGAG
GGTGAGGACTTCGAGGCCCGCGGGAGCCGCTTCTCCAAGTCTGCCGACGAGAGGCAGCGC
ATGTTGGTGCAGCGTAAGGATGACCTCCTGCAGCAAGCTCGGAGGCGTTTCTTGAACAGA
AGTTCTGAGGATGACTCGGCCTCGGAGAGCCCCCTCCCCTCGGAAGGCGCGACCTCTGAT
CCTGTGACGCTGCGCCGAAGGATGCTGGCTGCCGCCGCGGAACGGAGACTCCAGAAGCAG
CAGACGTCCTAGCACTTCCTCAGCTGCCTCCTCCTGAGCTGCGCGCCCACCCAAGAGGCC
TGTCCCCAGTTCTGCCTGCTGTTCGAAGACGTGGGCTTGACTGCATTGCCGCTGTATAAA
GCATGTGGTCTTAATAGTGTTTGGACAGCTGACAAATTTAATCCTTTTTTGTAATACTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34784904|gb|AAH56869.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34784904|gb|AAH56869.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               60-195, gnl|bosTau2|chr18 (23870262-23870127)
               

               
               60-195, gnl|Hg17|chr16 (54960741-54960606)
               

               
               60-195, gnl|Mm7|chr8 (92565213-92565078)
               


               
               463-780, gnl|bosTau2|chr18 (25332018-25331687)
               

               
               463-780, gnl|Hg17|chr16 (54954471-54954144)
               

               
               463-780, gnl|Mm7|chr8 (92562360-92562048)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-195, gnl|bosTau2|chr18 (23870262-23870127)
               

               
               60-195, gnl|Hg17|chr16 (54960741-54960606)
               

               
               60-195, gnl|Mm7|chr8 (92565213-92565078)
               


               
               463-780, gnl|bosTau2|chr18 (25332018-25331687)
               

               
               463-780, gnl|Hg17|chr16 (54954471-54954144)
               

               
               463-780, gnl|Mm7|chr8 (92562360-92562048)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	60-195, gnl\|bosTau2\|chr18 (23870262-23870127)
	60-195, gnl\|Hg17\|chr16 (54960741-54960606)
	60-195, gnl\|Mm7\|chr8 (92565213-92565078)

	463-780, gnl\|bosTau2\|chr18 (25332018-25331687)
	463-780, gnl\|Hg17\|chr16 (54954471-54954144)
	463-780, gnl\|Mm7\|chr8 (92562360-92562048)