Non-Coding RNA Search

Ss1.1-Pey1-51B08.5

Sequence:


               
               GTGGAGAGGCAGGAACGCAGCGTCTATGAAGACGGGCCCCTTTGCGGAGCACTCCAACCA
GCTGTGGAACATCAGTGCCGTCCCGTCCTGGTCCAAAGTCAACCAGGGTCTCATCCGCAT
GTACAAGGCCGAGTGCCTGGAGAAGTTCCCCGTGATCCAGCACTTCAAGTTCGGGAGCCT
GCTGCCCATCCATCCCGTCGCATCGTGCTAGGGGGGGCCCACTGCCGGCCGTCCAGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGAGAGGCAGGAACGCAGCGTCTATGAAGACGGGCCCCTTTGCGGAGCACTCCAACCA
GCTGTGGAACATCAGTGCCGTCCCGTCCTGGTCCAAAGTCAACCAGGGTCTCATCCGCAT
GTACAAGGCCGAGTGCCTGGAGAAGTTCCCCGTGATCCAGCACTTCAAGTTCGGGAGCCT
GCTGCCCATCCATCCCGTCGCATCGTGCTAGGGGGGGCCCACTGCCGGCCGTCCAGGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51491209|emb|CAH18670.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51491209|emb|CAH18670.1|

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               26-143, gnl|bosTau2|chr11 (78919823-78919941)
               

               
               26-143, gnl|canFam2|chr9 (57885742-57885616)
               

               
               26-143, gnl|danRer3|chrNA (77925272-77925151)
               

               
               26-143, gnl|dasNov1|scaffold_20471 (6603-6477)
               

               
               26-143, gnl|echTel1|scaffold_280275 (762-636)
               

               
               26-143, gnl|fr1|chrUn (267533049-267532923)
               

               
               26-143, gnl|galGal2|chrUn (40857726-40857597)
               

               
               26-143, gnl|hg17|chr9 (128984265-128984391)
               

               
               26-143, gnl|Hg17|chr9 (128984278-128984396)
               

               
               26-143, gnl|mm7|chr2 (30450589-30450714)
               

               
               26-143, gnl|Mm7|chr2 (30450601-30450719)
               

               
               26-143, gnl|monDom2|scaffold_51 (3812671-3812797)
               

               
               26-143, gnl|panTro1|chr11 (113828151-113828277)
               

               
               26-143, gnl|rheMac2|chr15 (9703755-9703629)
               

               
               26-143, gnl|rn3|chr3 (9487795-9487920)
               

               
               26-143, gnl|tetNig1|chrUn_random (19328405-19328527)
               

               
               26-143, gnl|xenTro1|scaffold_1229 (211606-211741)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-143, gnl|bosTau2|chr11 (78919823-78919941)
               

               
               26-143, gnl|canFam2|chr9 (57885742-57885616)
               

               
               26-143, gnl|danRer3|chrNA (77925272-77925151)
               

               
               26-143, gnl|dasNov1|scaffold_20471 (6603-6477)
               

               
               26-143, gnl|echTel1|scaffold_280275 (762-636)
               

               
               26-143, gnl|fr1|chrUn (267533049-267532923)
               

               
               26-143, gnl|galGal2|chrUn (40857726-40857597)
               

               
               26-143, gnl|hg17|chr9 (128984265-128984391)
               

               
               26-143, gnl|Hg17|chr9 (128984278-128984396)
               

               
               26-143, gnl|mm7|chr2 (30450589-30450714)
               

               
               26-143, gnl|Mm7|chr2 (30450601-30450719)
               

               
               26-143, gnl|monDom2|scaffold_51 (3812671-3812797)
               

               
               26-143, gnl|panTro1|chr11 (113828151-113828277)
               

               
               26-143, gnl|rheMac2|chr15 (9703755-9703629)
               

               
               26-143, gnl|rn3|chr3 (9487795-9487920)
               

               
               26-143, gnl|tetNig1|chrUn_random (19328405-19328527)
               

               
               26-143, gnl|xenTro1|scaffold_1229 (211606-211741)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.20816)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               pla (0.133672)

	26-143, gnl\|bosTau2\|chr11 (78919823-78919941)
	26-143, gnl\|canFam2\|chr9 (57885742-57885616)
	26-143, gnl\|danRer3\|chrNA (77925272-77925151)
	26-143, gnl\|dasNov1\|scaffold_20471 (6603-6477)
	26-143, gnl\|echTel1\|scaffold_280275 (762-636)
	26-143, gnl\|fr1\|chrUn (267533049-267532923)
	26-143, gnl\|galGal2\|chrUn (40857726-40857597)
	26-143, gnl\|hg17\|chr9 (128984265-128984391)
	26-143, gnl\|Hg17\|chr9 (128984278-128984396)
	26-143, gnl\|mm7\|chr2 (30450589-30450714)
	26-143, gnl\|Mm7\|chr2 (30450601-30450719)
	26-143, gnl\|monDom2\|scaffold_51 (3812671-3812797)
	26-143, gnl\|panTro1\|chr11 (113828151-113828277)
	26-143, gnl\|rheMac2\|chr15 (9703755-9703629)
	26-143, gnl\|rn3\|chr3 (9487795-9487920)
	26-143, gnl\|tetNig1\|chrUn_random (19328405-19328527)
	26-143, gnl\|xenTro1\|scaffold_1229 (211606-211741)