Ss1.1-Pey1-51B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAAATTAGGTGTAATTAGTTCCGAAGAACTTCCTTTGTACTACAGGAGAAGTATTGAAC TAAATAGCAATTCTTTGGAATCTTATGAGAATATCATGCAAAGTTCTTTGGGATTTGTTA ATCCAGGCGTAGTTGAATTCCTTCTAGGAAAACTAGGAATAGATGAATCTAATCCACCAT CTTTAATGAGAGGCCTACAAAGCAAAAATTTCTCTGAAGATGATTTCGCTTCTGCCTTAA GAAAGAAACAGTCTGCATCTTGGGCTTTAAAATGTGTGAAGATTGGAGTTGATTATTTTA AGGTGGGACGCCATGTGGATGCTATGAATGAATACAATAAAGCTCTGGAAATAGACAAAC AAAATGTGGAAGCTTTAGTAGCTCGAGGAGCATTATATGCAACAAAAGGAAGTCTGAACA AAGCAATAGAAGATTTTGAGCTTGCTTTGGAAAACTGTCCAACTCACAGGAATGCAAGAA AATACCTTTGCCAGACACTTGTAGAAAGAGGAGGGCAGTTAGAAGAAGAAGAAAAGTTTT TAAATGCTGAAAGTTACTATAAGAAAGCTTTGGCTTTGGATGGAACTTTTAAAGATGCAG AGGATGCTTTGCAGAAGCTTCATAAATACATGCAGGTGATTCTTTATTTCCTCTTAGAAA TTTAGCAATACTGAAATTAATGCAAAAACTCGACTTTCTTCTAAGGAAAATTATTATAAA TCACTTAAGACATTATGAAGTTTTTTTAGATAGAGCTTTTCTTAATTGGGTTTGATAGTA CTTCATAGTTTTGTTAATTCTCAAAAGTAAAAATAGTCCTGTGAGAAAATTCCCTTTGCC TAAATTTGGTATGTGATTTTGAGAACTTCTAGTAGTGAACATTCCTGGTGGTTACAGAAT TCAGTATTGTTACTATAATTGATCTAATTATAAAAACCTTTTTGAGAAATATTTTAAACT GTCTTTTCCTGTAATACTGATGATGATGTTTTCTCATGCATTTTCTTCTGAATTGGACCA TTGCTGCTGTGTCTGTGACATCTGGTGCTGCTCATCCCCATCCTCAAACTGGAAAATGAT TTCTTATGTAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAAATTAGGTGTAATTAGTTCCGAAGAACTTCCTTTGTACTACAGGAGAAGTATTGAAC TAAATAGCAATTCTTTGGAATCTTATGAGAATATCATGCAAAGTTCTTTGGGATTTGTTA ATCCAGGCGTAGTTGAATTCCTTCTAGGAAAACTAGGAATAGATGAATCTAATCCACCAT CTTTAATGAGAGGCCTACAAAGCAAAAATTTCTCTGAAGATGATTTCGCTTCTGCCTTAA GAAAGAAACAGTCTGCATCTTGGGCTTTAAAATGTGTGAAGATTGGAGTTGATTATTTTA AGGTGGGACGCCATGTGGATGCTATGAATGAATACAATAAAGCTCTGGAAATAGACAAAC AAAATGTGGAAGCTTTAGTAGCTCGAGGAGCATTATATGCAACAAAAGGAAGTCTGAACA AAGCAATAGAAGATTTTGAGCTTGCTTTGGAAAACTGTCCAACTCACAGGAATGCAAGAA AATACCTTTGCCAGACACTTGTAGAAAGAGGAGGGCAGTTAGAAGAAGAAGAAAAGTTTT TAAATGCTGAAAGTTACTATAAGAAAGCTTTGGCTTTGGATGGAACTTTTAAAGATGCAG AGGATGCTTTGCAGAAGCTTCATAAATACATGCAGGTGATTCTTTATTTCCTCTTAGAAA TTTAGCAATACTGAAATTAATGCAAAAACTCGACTTTCTTCTAAGGAAAATTATTATAAA TCACTTAAGACATTATGAAGTTTTTTTAGATAGAGCTTTTCTTAATTGGGTTTGATAGTA CTTCATAGTTTTGTTAATTCTCAAAAGTAAAAATAGTCCTGTGAGAAAATTCCCTTTGCC TAAATTTGGTATGTGATTTTGAGAACTTCTAGTAGTGAACATTCCTGGTGGTTACAGAAT TCAGTATTGTTACTATAATTGATCTAATTATAAAAACCTTTTTGAGAAATATTTTAAACT GTCTTTTCCTGTAATACTGATGATGATGTTTTCTCATGCATTTTCTTCTGAATTGGACCA TTGCTGCTGTGTCTGTGACATCTGGTGCTGCTCATCCCCATCCTCAAACTGGAAAATGAT TTCTTATGTAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 45-202, + strand, RNAz p=0.708732 | |
| 518-636, + strand, RNAz p=0.678028 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 45-202, + strand, RNAz p=0.708732 | |
| 518-636, + strand, RNAz p=0.678028 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 45-202, gnl|bosTau2|chr1 (52581917-52581760) | |
| 45-202, gnl|Hg17|chr3 (181805340-181805497) | |
| 45-202, gnl|Mm7|chr3 (33612214-33612371) | |
| 274-397, gnl|bosTau2|chr1 (52580871-52580748) | |
| 274-397, gnl|canFam2|chr34 (16916032-16916181) | |
| 274-397, gnl|danRer3|chrNA (229467435-229467295) | |
| 274-397, gnl|dasNov1|scaffold_1307 (7940-8090) | |
| 274-397, gnl|echTel1|scaffold_171194 (836-738) | |
| 274-397, gnl|fr1|chrUn (202501216-202501038) | |
| 274-397, gnl|galGal2|chr9 (16575075-16574919) | |
| 274-397, gnl|hg17|chr3 (181806734-181806889) | |
| 274-397, gnl|Hg17|chr3 (181806742-181806865) | |
| 274-397, gnl|loxAfr1|scaffold_7999 (49351-49501) | |
| 274-397, gnl|mm7|chr3 (33613179-33613329) | |
| 274-397, gnl|Mm7|chr3 (33613186-33613309) | |
| 274-397, gnl|monDom2|scaffold_28 (26806942-26806789) | |
| 274-397, gnl|oryCun1|scaffold_211089 (60899-61047) | |
| 274-397, gnl|panTro1|chr2 (185566078-185566233) | |
| 274-397, gnl|rheMac2|chr2 (106141837-106141682) | |
| 274-397, gnl|rn3|chr2 (120054369-120054519) | |
| 274-397, gnl|tetNig1|chrUn_random (45543490-45543620) | |
| 274-397, gnl|xenTro1|scaffold_213 (148921-149064) | |
| 518-795, gnl|bosTau2|chr1 (52578389-52578107) | |
| 518-795, gnl|Hg17|chr3 (181808138-181808457) | |
| 518-795, gnl|Mm7|chr3 (33615582-33615860) | |
| 813-1091, gnl|bosTau2|chr1 (52578117-52577846) | |
| 813-1091, gnl|Hg17|chr3 (181808413-181808724) | |
| 813-1091, gnl|Mm7|chr3 (33615835-33616155) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-202, gnl|bosTau2|chr1 (52581917-52581760) | |
| 45-202, gnl|Hg17|chr3 (181805340-181805497) | |
| 45-202, gnl|Mm7|chr3 (33612214-33612371) | |
| 274-397, gnl|bosTau2|chr1 (52580871-52580748) | |
| 274-397, gnl|canFam2|chr34 (16916032-16916181) | |
| 274-397, gnl|danRer3|chrNA (229467435-229467295) | |
| 274-397, gnl|dasNov1|scaffold_1307 (7940-8090) | |
| 274-397, gnl|echTel1|scaffold_171194 (836-738) | |
| 274-397, gnl|fr1|chrUn (202501216-202501038) | |
| 274-397, gnl|galGal2|chr9 (16575075-16574919) | |
| 274-397, gnl|hg17|chr3 (181806734-181806889) | |
| 274-397, gnl|Hg17|chr3 (181806742-181806865) | |
| 274-397, gnl|loxAfr1|scaffold_7999 (49351-49501) | |
| 274-397, gnl|mm7|chr3 (33613179-33613329) | |
| 274-397, gnl|Mm7|chr3 (33613186-33613309) | |
| 274-397, gnl|monDom2|scaffold_28 (26806942-26806789) | |
| 274-397, gnl|oryCun1|scaffold_211089 (60899-61047) | |
| 274-397, gnl|panTro1|chr2 (185566078-185566233) | |
| 274-397, gnl|rheMac2|chr2 (106141837-106141682) | |
| 274-397, gnl|rn3|chr2 (120054369-120054519) | |
| 274-397, gnl|tetNig1|chrUn_random (45543490-45543620) | |
| 274-397, gnl|xenTro1|scaffold_213 (148921-149064) | |
| 518-795, gnl|bosTau2|chr1 (52578389-52578107) | |
| 518-795, gnl|Hg17|chr3 (181808138-181808457) | |
| 518-795, gnl|Mm7|chr3 (33615582-33615860) | |
| 813-1091, gnl|bosTau2|chr1 (52578117-52577846) | |
| 813-1091, gnl|Hg17|chr3 (181808413-181808724) | |
| 813-1091, gnl|Mm7|chr3 (33615835-33616155) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |