Ss1.1-Pey1-51C11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGAAGAGGATCGGGGCTGATGGCGGCTCAGGCTCAGAAGTCTTTTTAACACCCTTAT CTGCCCAGGAGCTGCCCACTCGATTCACAATGACATCCTTTCAAGAAGTCCCATTGCAGA CTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAGAGTTATCTTCCTAATGCAC ACCTGGAATGTCATTATACCTTAACTCCATATATCCATCCACATCCAAAAGATTGGGTTG GTATATTCAAGGTTGGATGGAGTACTGCTCGTGATTATTATACATTTTTATGGTCCCCTA TGCCTGAACACTATGTAGAAGGATCAACAGTCAATTGTGTGTTAGCATTTCAAGGTTATT ACCTTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTATGTTACCCATAAGGGTGAAA TTCGTGGAGCAAGTACACCTTTTCAGTTTCGAGCTTCTTCTCCAGTGGAAGAGTTGCTTA CTATGGAAGATGAAGGAAATTCTGACATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTG AGTTGAAAATTGAGAAAACAATGAAAGAAAAAGAAGAACTGTTAAAGTTAATTGAAGTTT TGGAAAAAGAAACAACACAACTTCGAGAACAAGTTGGGAGAATGGAAAGAGAGCTTAACC ATGAGAAAGAAAGATGTGACCAACTGCAAGCAGAGCAGTAGGGCCTTATTGAAATCTCAC AAAATTTAAAAATGGAAAATGAGGAATTTAAGAAGAGATATAATGATGCTACATCCAAAG CTCTGCAGCTTGAGGAAGATATTGTGTCAGTGACACATAAAGCAATTGAAAAAGAAACTG AATTAGACAGTTTAAGGGACAAACTCAGGAAGGCACAATATGAAAGAGAACAACTTGAAT GTCAGTTGAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGAAGAGGATCGGGGCTGATGGCGGCTCAGGCTCAGAAGTCTTTTTAACACCCTTAT CTGCCCAGGAGCTGCCCACTCGATTCACAATGACATCCTTTCAAGAAGTCCCATTGCAGA CTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAGAGTTATCTTCCTAATGCAC ACCTGGAATGTCATTATACCTTAACTCCATATATCCATCCACATCCAAAAGATTGGGTTG GTATATTCAAGGTTGGATGGAGTACTGCTCGTGATTATTATACATTTTTATGGTCCCCTA TGCCTGAACACTATGTAGAAGGATCAACAGTCAATTGTGTGTTAGCATTTCAAGGTTATT ACCTTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTATGTTACCCATAAGGGTGAAA TTCGTGGAGCAAGTACACCTTTTCAGTTTCGAGCTTCTTCTCCAGTGGAAGAGTTGCTTA CTATGGAAGATGAAGGAAATTCTGACATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTG AGTTGAAAATTGAGAAAACAATGAAAGAAAAAGAAGAACTGTTAAAGTTAATTGAAGTTT TGGAAAAAGAAACAACACAACTTCGAGAACAAGTTGGGAGAATGGAAAGAGAGCTTAACC ATGAGAAAGAAAGATGTGACCAACTGCAAGCAGAGCAGTAGGGCCTTATTGAAATCTCAC AAAATTTAAAAATGGAAAATGAGGAATTTAAGAAGAGATATAATGATGCTACATCCAAAG CTCTGCAGCTTGAGGAAGATATTGTGTCAGTGACACATAAAGCAATTGAAAAAGAAACTG AATTAGACAGTTTAAGGGACAAACTCAGGAAGGCACAATATGAAAGAGAACAACTTGAAT GTCAGTTGAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 82-431, + strand, RNAz p=0.905816 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 82-431, + strand, RNAz p=0.905816 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_006024, + |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 82-253, gnl|bosTau2|chr4 (39677325-39677154) | |
| 82-253, gnl|Hg17|chr7 (27561376-27561547) | |
| 82-253, gnl|Mm7|chr6 (52684667-52684838) | |
| 326-542, gnl|bosTau2|chr4 (39661588-39661371) | |
| 326-542, gnl|Hg17|chr7 (27578652-27578880) | |
| 326-542, gnl|Mm7|chr6 (52692613-52692838) | |
| 700-850, gnl|bosTau2|chr4 (39648773-39648623) | |
| 700-850, gnl|canFam2|chr14 (43841160-43841308) | |
| 700-850, gnl|dasNov1|scaffold_9716 (43610-43758) | |
| 700-850, gnl|echTel1|scaffold_120740 (109-257) | |
| 700-850, gnl|fr1|chrUn (24390672-24390830) | |
| 700-850, gnl|galGal2|chr2 (32120064-32120212) | |
| 700-850, gnl|hg17|chr7 (27598021-27598169) | |
| 700-850, gnl|Hg17|chr7 (27598020-27598170) | |
| 700-850, gnl|mm7|chr6 (52700219-52700367) | |
| 700-850, gnl|Mm7|chr6 (52700218-52700368) | |
| 700-850, gnl|monDom2|scaffold_57 (233909-233761) | |
| 700-850, gnl|oryCun1|scaffold_193136 (5625-5773) | |
| 700-850, gnl|panTro1|chr6 (28729374-28729522) | |
| 700-850, gnl|rheMac2|chr3 (98438987-98438839) | |
| 700-850, gnl|rn3|chr4 (81332708-81332856) | |
| 700-850, gnl|tetNig1|chr8 (6595513-6595385) | |
| 700-850, gnl|xenTro1|scaffold_29 (2302973-2303121) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 82-253, gnl|bosTau2|chr4 (39677325-39677154) | |
| 82-253, gnl|Hg17|chr7 (27561376-27561547) | |
| 82-253, gnl|Mm7|chr6 (52684667-52684838) | |
| 326-542, gnl|bosTau2|chr4 (39661588-39661371) | |
| 326-542, gnl|Hg17|chr7 (27578652-27578880) | |
| 326-542, gnl|Mm7|chr6 (52692613-52692838) | |
| 700-850, gnl|bosTau2|chr4 (39648773-39648623) | |
| 700-850, gnl|canFam2|chr14 (43841160-43841308) | |
| 700-850, gnl|dasNov1|scaffold_9716 (43610-43758) | |
| 700-850, gnl|echTel1|scaffold_120740 (109-257) | |
| 700-850, gnl|fr1|chrUn (24390672-24390830) | |
| 700-850, gnl|galGal2|chr2 (32120064-32120212) | |
| 700-850, gnl|hg17|chr7 (27598021-27598169) | |
| 700-850, gnl|Hg17|chr7 (27598020-27598170) | |
| 700-850, gnl|mm7|chr6 (52700219-52700367) | |
| 700-850, gnl|Mm7|chr6 (52700218-52700368) | |
| 700-850, gnl|monDom2|scaffold_57 (233909-233761) | |
| 700-850, gnl|oryCun1|scaffold_193136 (5625-5773) | |
| 700-850, gnl|panTro1|chr6 (28729374-28729522) | |
| 700-850, gnl|rheMac2|chr3 (98438987-98438839) | |
| 700-850, gnl|rn3|chr4 (81332708-81332856) | |
| 700-850, gnl|tetNig1|chr8 (6595513-6595385) | |
| 700-850, gnl|xenTro1|scaffold_29 (2302973-2303121) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ece (0.229305) | |
| cut (0.169924) | |
| ssp (0.13552) | |
| ova (0.129132) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| cut (0.169924) | |
| ssp (0.13552) | |
| ova (0.129132) |