Non-Coding RNA Search

Ss1.1-Pey1-52H05.5

Sequence:


               
               GACTGGTTTACAGAACAAGATTTATGACCAAGAACAAAAGGGCTCTTTTAATTAAGCCTA
TGGACGAGGTAAAATTTGAGTAAGCCATGATCGTTGAATCATTAGCGATTTTTTAAAAAA
TGATTACTTGAAGATTAAAATATCAAAAATTACAGTTTTTGTATTAATATTTCAGTAAGA
AATTCTTTGTATGTATTAAAATGTAAGAAAATGCTTATCTCCAAGTCAGGCACCCTTGTG
ACTTTTCACCCTTTGAGCTTTAGAGTCATGACCAGAAGTAAAAATGAAGAACATGCTGAA
GCCAACCAAGGACCTGAGAGGGGAAAGAAATCTCCATTCTGCAAAACTTTACCTATTGAA
ACAACGACTTAGGCTAGGTCCTCAAAGCTGATGATCTGAAGGAATCCTGATGCAAAGAAA
ATAATTTCTTCATGTCTGACATAAGGTCATCCATTGGCTCCCATGTAAGGGCACATTCTC
TACCCCTCTATAGCCAGTGGAAAGCAGAGAGTCCAAAGAACAGCAGTCAAAGGACTTGGA
TCCTCAGAGCTGACAATTAGGAGTGCTGACTCTGCTATCTTTGTGCTCCAAGGGTCTCTA
ACATACTCTCAGTTTCAGGCCAAATGACCATGATTGGAAAAGAAATCCTGAACAGACAAC
TTAGAAGGGAATTAGATGTTCTTGAACGTAGAGTTTGCCTTTTGTTCCCTGACAAATAGT
CTCAGTGAGAGTTGGAAGGACCCACTAATAGGACGAAGTTGTAATGGGGGTAAAAACAGA
ACCCATGCATAATACAGCACCTTTCCTGATATCACTGCATCCTTGATAACTGTGCAAAGC
TGACATTTGCTGAATGCCTTTCATATTTCTTTAATGGATCTATTAAAACTTTTAACTAAG
ACGTATTGTACATCATATATTAACTTTGAATTTCCAGCAAAACTTGAGTATCAATAAAAA
ACTTTGATAAATTCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTGGTTTACAGAACAAGATTTATGACCAAGAACAAAAGGGCTCTTTTAATTAAGCCTA
TGGACGAGGTAAAATTTGAGTAAGCCATGATCGTTGAATCATTAGCGATTTTTTAAAAAA
TGATTACTTGAAGATTAAAATATCAAAAATTACAGTTTTTGTATTAATATTTCAGTAAGA
AATTCTTTGTATGTATTAAAATGTAAGAAAATGCTTATCTCCAAGTCAGGCACCCTTGTG
ACTTTTCACCCTTTGAGCTTTAGAGTCATGACCAGAAGTAAAAATGAAGAACATGCTGAA
GCCAACCAAGGACCTGAGAGGGGAAAGAAATCTCCATTCTGCAAAACTTTACCTATTGAA
ACAACGACTTAGGCTAGGTCCTCAAAGCTGATGATCTGAAGGAATCCTGATGCAAAGAAA
ATAATTTCTTCATGTCTGACATAAGGTCATCCATTGGCTCCCATGTAAGGGCACATTCTC
TACCCCTCTATAGCCAGTGGAAAGCAGAGAGTCCAAAGAACAGCAGTCAAAGGACTTGGA
TCCTCAGAGCTGACAATTAGGAGTGCTGACTCTGCTATCTTTGTGCTCCAAGGGTCTCTA
ACATACTCTCAGTTTCAGGCCAAATGACCATGATTGGAAAAGAAATCCTGAACAGACAAC
TTAGAAGGGAATTAGATGTTCTTGAACGTAGAGTTTGCCTTTTGTTCCCTGACAAATAGT
CTCAGTGAGAGTTGGAAGGACCCACTAATAGGACGAAGTTGTAATGGGGGTAAAAACAGA
ACCCATGCATAATACAGCACCTTTCCTGATATCACTGCATCCTTGATAACTGTGCAAAGC
TGACATTTGCTGAATGCCTTTCATATTTCTTTAATGGATCTATTAAAACTTTTAACTAAG
ACGTATTGTACATCATATATTAACTTTGAATTTCCAGCAAAACTTGAGTATCAATAAAAA
ACTTTGATAAATTCAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               162-974, gnl|bosTau2|chr15 (28995660-28994865)
               

               
               162-974, gnl|Hg17|chr11 (6690898-6687850)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               162-974, gnl|bosTau2|chr15 (28995660-28994865)
               

               
               162-974, gnl|Hg17|chr11 (6690898-6687850)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               duo (0.518403)
               

               
               spl (0.286369)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.518403)
               

               
               spl (0.286369)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	162-974, gnl\|bosTau2\|chr15 (28995660-28994865)
	162-974, gnl\|Hg17\|chr11 (6690898-6687850)

	duo (0.518403)
	spl (0.286369)
	sto (0.179824)
	rec (0.17307)
	lin (0.145603)
	sug (0.127291)
	spc (0.113366)