Non-Coding RNA Search

Ss1.1-Pey1-55C09.5.5

Sequence:


               
               GAATGGACAAATCAGTCAATGCTTTGGTGTTTAGAGGTTTTGACCTTTTTTGTGGGGTGG
GGGTGGGGTAATGGGGACCTAAAGCGTGTACAGTAAACAAATATTTTAAAGGAGATCATT
TTTATAGACAGCAGTTTTTATAATTTTCTAAATTTTTGCTTTTCTCAGTCTGCCATTCTT
GCAGGGTGGTTTTGTTTCTAAAACAGAATGTGCTTTCTACAGTTCTTGTGATGATAGCTT
TTCTGAAGCATGATATCTGCACAGAGGTTAGGAGAGAATAGCTTCAAGAAAATGAACCCT
TGTTTAATTATAGGATAAAGGAGCTACTCCCGCAACTATAAATAGGTTTTTGCCAAGTAT
GGGTATTTCTTTTCCCTTTTGTAAACCCATGACATTTCTGTTCGATTCAGCAGTTTTCAT
CAGGCAGGATCTGGTGACACTTTGCACCTGGCTGCAGAAGAGGACGAAGCCCTCCAGCCT
CTGGGAAGTTATTGCTCACACACCGTGGATTCAGAGGGTAGCCAGGAATGTTTTCTAGTT
TTATAAATGTACAAACCCTCTCCTGCAGGATGGACCTAAATTCATTGATTCAAATTCAGT
ACTTCTATCAGGCATCCTTTTTTGGGTAACTAATTGTTAAAACAGAAATCTTCTCAGTAG
AGAAAATTTTTGGAAAAGAGAAAAATAAAAGGAAGAGAAAAGATCCAAGTAGGTACACTA
CTTAAATACTAACTTAACATTTTGGACTTTCAGCCTTTTTTAGGGCTTTTGTTTGGTTCG
GTTTTACATAACTGAGATCATACTGCATATACAGTTTTGTATTCTACTTTCTTATTTAAC
TTTATAACTTAAATATTTTTCCATGATATTATAAACTCTTCAGAGACATGCGTACAGCCT
TCCTTTTATAAATAAGGTTGGGATATCTCTTGGTCTCTTTATTAGTTCCTTCTGCTAACC
TTTGAGCATAGTCCCTGTGCTCTGCTATCAGAGTGAAGTGAGTGAATCAAATGCCTTACA
GTTTTCCCACCTAATATTCTACTCTTTTAACATTTGGTAAGTAAGTGGGCTTTTTTTTTT
TTTTCCAGCCTGTTGTACTCATTCAATGACACACTTATAATTTTCTTTTTTTTATTTATT
TATTTATTTTTTTTATTTTGGTTGAATTGTTGCGTAGGGAAAAGGAAATGCTGGTATAGA
AGGCAGCCTATGATTTCGAGCATGGGATAGGGTGGGGATTTAAGGGATCTTACGGTGCTA
GATGAGTTCAAGGTTGGCTTTATTACTGTTTTTTTCAACCTTTGTGTCAAAATGAGATTT
CATGTTCCTGTTAAAACTTGCAATTTGAGTACTGTGTTTCTTGTGTTGTCCAAGGAAAGA
TGATAACCTGTAGCATGTATGTATTCATTTGAAATCTTATGAATGTATTAAATGTACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATGGACAAATCAGTCAATGCTTTGGTGTTTAGAGGTTTTGACCTTTTTTGTGGGGTGG
GGGTGGGGTAATGGGGACCTAAAGCGTGTACAGTAAACAAATATTTTAAAGGAGATCATT
TTTATAGACAGCAGTTTTTATAATTTTCTAAATTTTTGCTTTTCTCAGTCTGCCATTCTT
GCAGGGTGGTTTTGTTTCTAAAACAGAATGTGCTTTCTACAGTTCTTGTGATGATAGCTT
TTCTGAAGCATGATATCTGCACAGAGGTTAGGAGAGAATAGCTTCAAGAAAATGAACCCT
TGTTTAATTATAGGATAAAGGAGCTACTCCCGCAACTATAAATAGGTTTTTGCCAAGTAT
GGGTATTTCTTTTCCCTTTTGTAAACCCATGACATTTCTGTTCGATTCAGCAGTTTTCAT
CAGGCAGGATCTGGTGACACTTTGCACCTGGCTGCAGAAGAGGACGAAGCCCTCCAGCCT
CTGGGAAGTTATTGCTCACACACCGTGGATTCAGAGGGTAGCCAGGAATGTTTTCTAGTT
TTATAAATGTACAAACCCTCTCCTGCAGGATGGACCTAAATTCATTGATTCAAATTCAGT
ACTTCTATCAGGCATCCTTTTTTGGGTAACTAATTGTTAAAACAGAAATCTTCTCAGTAG
AGAAAATTTTTGGAAAAGAGAAAAATAAAAGGAAGAGAAAAGATCCAAGTAGGTACACTA
CTTAAATACTAACTTAACATTTTGGACTTTCAGCCTTTTTTAGGGCTTTTGTTTGGTTCG
GTTTTACATAACTGAGATCATACTGCATATACAGTTTTGTATTCTACTTTCTTATTTAAC
TTTATAACTTAAATATTTTTCCATGATATTATAAACTCTTCAGAGACATGCGTACAGCCT
TCCTTTTATAAATAAGGTTGGGATATCTCTTGGTCTCTTTATTAGTTCCTTCTGCTAACC
TTTGAGCATAGTCCCTGTGCTCTGCTATCAGAGTGAAGTGAGTGAATCAAATGCCTTACA
GTTTTCCCACCTAATATTCTACTCTTTTAACATTTGGTAAGTAAGTGGGCTTTTTTTTTT
TTTTCCAGCCTGTTGTACTCATTCAATGACACACTTATAATTTTCTTTTTTTTATTTATT
TATTTATTTTTTTTATTTTGGTTGAATTGTTGCGTAGGGAAAAGGAAATGCTGGTATAGA
AGGCAGCCTATGATTTCGAGCATGGGATAGGGTGGGGATTTAAGGGATCTTACGGTGCTA
GATGAGTTCAAGGTTGGCTTTATTACTGTTTTTTTCAACCTTTGTGTCAAAATGAGATTT
CATGTTCCTGTTAAAACTTGCAATTTGAGTACTGTGTTTCTTGTGTTGTCCAAGGAAAGA
TGATAACCTGTAGCATGTATGTATTCATTTGAAATCTTATGAATGTATTAAATGTACTGC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               27-1440, gnl|bosTau2|chr22 (12146817-12148193)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-1440, gnl|bosTau2|chr22 (12146817-12148193)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               fce (0.271592)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	fce (0.271592)
	mga (0.160205)
	pty (0.142714)
	ssp (0.13552)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	spc (0.113366)
	cty (0.10408)
	ldo (0.0970026)