Ss1.1-Pey1-55C12.5
|
TTCAGATGAAAACTCTGAAGGTTCATAATTTCTCAGAAAAGTCACGTGCCTGTATAAAGA
TGCTACTAGTTTTCCTCTGGAACTTTTTTCTTTAAGATTATATGTAGTATTACTTGAAAT
CTAGGATTATTACTTAGATGGGCATTGTAGTTAACGGTTGATGGGGTCTCATTTGGGATA
GAGTCCAGAGAAGGGATGGTTATTTCTAGAAGTCCTCTCTCCCCTCACTGGACCAAACAG
CTTCTTTCTCTTGTAGTAAACTCACTCTATTTTATTATTTTTTTAAGTACTCCTACTGCC
CATCTGGTGGGATAGCCCCCAAATGAGCAACGTAAAATCTCGGGTTCTTGGTAGAGGTTG
GTTATTTCTCCAGTTTGTTCTTTAGACAACTTTAGATGTTGATTTTTATTTTGTTCTTGA
AGCCATAGCTTTAAAAGAATTCAGAGATATTCATAGCTAGCTTGGAATTTGTAACCTCAG
CATAAGAGAGGTTTGTTCCTGGACGATTATTATCCAGTTGAGGTATGTTACACCATAGGA
TCATCTCACACTTATTGATGTCTGTTACTATGTCAAGTTACCCTTGTTACCATGTCATCT
CAGTATTATGTCCAGTGCTCTCAGGGGCCTTGACCTTTCCCATAGACACACTTGAGACGG
TAGGAGTGGTTGTGCAGTGTGGGTCACGCTTGAATGTGGATGTCTGTGTGCTGTCACTTT
GCTCTGGGTGGAAGTAGTTTATGGGTAACTTGTTTCCTCTCTGTTCCTAAGGTCCCCCCC
CCCTTTGGATAGAATGTGTTCAAACTCATTCTTATGTATGTAAATAGCACTGCCTCTGCT
GGGTGGAATTTGCATCTTTGATTTGCTTTCACACTTTATAGAGGTCAGTCTCATCAGGCT
GCCTTTTCCTTACTGGATTTTGCAATTGAGGTGAACCTGCTCCAACCTCAGGCAACGGGA
GGATGTAGGAAAGATTGAGATCAGGATGTGACCTCCTGGGGGCGCTGGAGAGGCCCATGG
GGAAGGGAGGCCTTTTTCTTTTAAGGGGATAAGGAACAAACCGAAGACTTAAACTCTGGG
GCTGTTCAGAGTTAGGCGAGATGAGGGGGTCTACCCTTTAAGCAGGTCTCGGATGCCCCC
ACCATCATCCAGTTTCCCAGTATTTTTACAAATGGAGATTGGGCCCCTCTCCTCTTTTCC
ATTTGTTGCTTGATCTCCGTCTCCCTCTTTGGTGCTTACATATTTCAGGCCGTTTAGCCA
AACCCTTGCCTATGACAGTATTTTGGTTCTGTGGTTCTCACCATTCCCTCTGGTCGCTGA
GCCTTTGGATAAAAACTCAGAGCCATCAGATGGGGCTTTGCCAGAACAGATGACTTTCCT
CTAATTGCACCTCTGCTCTGGCTCCTCAAAAACAATGAGTTGGCAGTAATGCAGTGTGGA
AGACTTCCCATTTCTCAGTGACCAGATTGTGAATAATTTCCAAGTGGATTTTCTACTGTT
ACTGTGGTTCTTTGTTTTGAAATAAAAATTTTGAATGTACATATAAACATCACAGGCCTG
TTTTTTTTTTGGTTTTTTTTTTGGTTTGGTCCTTCTTGTAACAGCAGAATCAGCTTTAAA
TCTTGGTATGGCCACTCGGTACCTATTGTAACTTTGAGTAAGTTTCTCATGAGAGTTTCA
TACAAATGAAAATAGCAATACTTATTTATTATGCAGATGAAATTGAAAAGCCTTAGTGGA
TTGCCTTGCATACTTAATAAATTATGTTGCTTGCTTAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCAGATGAAAACTCTGAAGGTTCATAATTTCTCAGAAAAGTCACGTGCCTGTATAAAGA
TGCTACTAGTTTTCCTCTGGAACTTTTTTCTTTAAGATTATATGTAGTATTACTTGAAAT
CTAGGATTATTACTTAGATGGGCATTGTAGTTAACGGTTGATGGGGTCTCATTTGGGATA
GAGTCCAGAGAAGGGATGGTTATTTCTAGAAGTCCTCTCTCCCCTCACTGGACCAAACAG
CTTCTTTCTCTTGTAGTAAACTCACTCTATTTTATTATTTTTTTAAGTACTCCTACTGCC
CATCTGGTGGGATAGCCCCCAAATGAGCAACGTAAAATCTCGGGTTCTTGGTAGAGGTTG
GTTATTTCTCCAGTTTGTTCTTTAGACAACTTTAGATGTTGATTTTTATTTTGTTCTTGA
AGCCATAGCTTTAAAAGAATTCAGAGATATTCATAGCTAGCTTGGAATTTGTAACCTCAG
CATAAGAGAGGTTTGTTCCTGGACGATTATTATCCAGTTGAGGTATGTTACACCATAGGA
TCATCTCACACTTATTGATGTCTGTTACTATGTCAAGTTACCCTTGTTACCATGTCATCT
CAGTATTATGTCCAGTGCTCTCAGGGGCCTTGACCTTTCCCATAGACACACTTGAGACGG
TAGGAGTGGTTGTGCAGTGTGGGTCACGCTTGAATGTGGATGTCTGTGTGCTGTCACTTT
GCTCTGGGTGGAAGTAGTTTATGGGTAACTTGTTTCCTCTCTGTTCCTAAGGTCCCCCCC
CCCTTTGGATAGAATGTGTTCAAACTCATTCTTATGTATGTAAATAGCACTGCCTCTGCT
GGGTGGAATTTGCATCTTTGATTTGCTTTCACACTTTATAGAGGTCAGTCTCATCAGGCT
GCCTTTTCCTTACTGGATTTTGCAATTGAGGTGAACCTGCTCCAACCTCAGGCAACGGGA
GGATGTAGGAAAGATTGAGATCAGGATGTGACCTCCTGGGGGCGCTGGAGAGGCCCATGG
GGAAGGGAGGCCTTTTTCTTTTAAGGGGATAAGGAACAAACCGAAGACTTAAACTCTGGG
GCTGTTCAGAGTTAGGCGAGATGAGGGGGTCTACCCTTTAAGCAGGTCTCGGATGCCCCC
ACCATCATCCAGTTTCCCAGTATTTTTACAAATGGAGATTGGGCCCCTCTCCTCTTTTCC
ATTTGTTGCTTGATCTCCGTCTCCCTCTTTGGTGCTTACATATTTCAGGCCGTTTAGCCA
AACCCTTGCCTATGACAGTATTTTGGTTCTGTGGTTCTCACCATTCCCTCTGGTCGCTGA
GCCTTTGGATAAAAACTCAGAGCCATCAGATGGGGCTTTGCCAGAACAGATGACTTTCCT
CTAATTGCACCTCTGCTCTGGCTCCTCAAAAACAATGAGTTGGCAGTAATGCAGTGTGGA
AGACTTCCCATTTCTCAGTGACCAGATTGTGAATAATTTCCAAGTGGATTTTCTACTGTT
ACTGTGGTTCTTTGTTTTGAAATAAAAATTTTGAATGTACATATAAACATCACAGGCCTG
TTTTTTTTTTGGTTTTTTTTTTGGTTTGGTCCTTCTTGTAACAGCAGAATCAGCTTTAAA
TCTTGGTATGGCCACTCGGTACCTATTGTAACTTTGAGTAAGTTTCTCATGAGAGTTTCA
TACAAATGAAAATAGCAATACTTATTTATTATGCAGATGAAATTGAAAAGCCTTAGTGGA
TTGCCTTGCATACTTAATAAATTATGTTGCTTGCTTAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
29-655, gnl|bosTau2|chr1 (31998573-31999197) |
|
29-655, gnl|Hg17|chr12 (7964457-7963816) |
|
29-655, gnl|Mm7|chr6 (122766073-122765426) |
| |
|
780-917, gnl|bosTau2|chr1 (31999263-31999394) |
|
780-917, gnl|canFam2|chr27 (40325492-40325195) |
|
780-917, gnl|dasNov1|scaffold_72339 (7100-7400) |
|
780-917, gnl|echTel1|scaffold_301934 (3253-2973) |
|
780-917, gnl|Hg17|chr13 (95206399-95206293) |
|
780-917, gnl|hg17|chr5 (167915533-167915843) |
|
780-917, gnl|loxAfr1|scaffold_54108 (11978-12285) |
|
780-917, gnl|mm7|chr6 (122765343-122765093) |
|
780-917, gnl|Mm7|chr6 (122765357-122765240) |
|
780-917, gnl|oryCun1|scaffold_189418 (61287-61569) |
|
780-917, gnl|panTro1|chr4 (175160106-175160416) |
|
780-917, gnl|rheMac2|chr6 (164934834-164935144) |
|
780-917, gnl|rn3|chr4 (159453650-159453390) |
| |
|
947-1774, gnl|bosTau2|chr1 (31999451-32000269) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
29-655, gnl|bosTau2|chr1 (31998573-31999197) |
|
29-655, gnl|Hg17|chr12 (7964457-7963816) |
|
29-655, gnl|Mm7|chr6 (122766073-122765426) |
| |
|
780-917, gnl|bosTau2|chr1 (31999263-31999394) |
|
780-917, gnl|canFam2|chr27 (40325492-40325195) |
|
780-917, gnl|dasNov1|scaffold_72339 (7100-7400) |
|
780-917, gnl|echTel1|scaffold_301934 (3253-2973) |
|
780-917, gnl|Hg17|chr13 (95206399-95206293) |
|
780-917, gnl|hg17|chr5 (167915533-167915843) |
|
780-917, gnl|loxAfr1|scaffold_54108 (11978-12285) |
|
780-917, gnl|mm7|chr6 (122765343-122765093) |
|
780-917, gnl|Mm7|chr6 (122765357-122765240) |
|
780-917, gnl|oryCun1|scaffold_189418 (61287-61569) |
|
780-917, gnl|panTro1|chr4 (175160106-175160416) |
|
780-917, gnl|rheMac2|chr6 (164934834-164935144) |
|
780-917, gnl|rn3|chr4 (159453650-159453390) |
| |
|
947-1774, gnl|bosTau2|chr1 (31999451-32000269) |
|
cbl (2.41075) |
|
amn (0.835422) |
|
fty (0.351679) |
|
fco (0.314416) |
|
eje (0.296501) |
|
nca (0.273748) |
|
che (0.272628) |
|
sug (0.254582) |
|
ese (0.253004) |
|
tes (0.207814) |
|
nbm (0.198649) |
|
col (0.195008) |
|
gul (0.177588) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
hlv (0.139256) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cbr (0.127975) |
|
tra (0.123092) |
|
eep (0.122564) |
|
eru (0.120048) |
|
jej (0.0989218) |
|
cbl (2.41075) |
|
amn (0.835422) |
|
fty (0.351679) |
|
fco (0.314416) |
|
eje (0.296501) |
|
nca (0.273748) |
|
che (0.272628) |
|
sug (0.254582) |
|
ese (0.253004) |
|
tes (0.207814) |
|
nbm (0.198649) |
|
col (0.195008) |
|
gul (0.177588) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
hlv (0.139256) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cbr (0.127975) |
|
tra (0.123092) |
|
eep (0.122564) |
|
eru (0.120048) |
|
jej (0.0989218) |
