Non-Coding RNA Search

Ss1.1-Pey1-55F04.5

Sequence:


               
               GTTGTGACACCTGGTTCCATGTGGCCTGTGTTGGCTGCAGCATCCAGGCTGCCAAGGAAG
CTGACTTCCGGTGCCCAGGCTGCCGTGTAGGCATCCAGAGCTAGGGCCGGCCACCAACAC
CAGAGGACAGAGCCGGCACCTCCAGGCCATGGGGGGACAGGGAGTCCTAAGAGATGCCTT
CTTCTTCCCTTGCCTTCCCCTGGGGTGGTGGGGGGATGAGTACAGAGGAAGGGTCCATTG
CTATGGATTATCAATTCAAGGCCCTTGTAGCCAAGGTGACAGAAGAGATGGTTTCCTGCC
AAAGATACTGCTGCCTCCAGGAAGTTGCCAGTGAGCTGGAAATCCCCACTGTTATAAGCT
GTTGTGGGTCCTTGTCATGGACACTAGAATGTGTGGTCAGGAGCATTCGACTGCAGAGGG
CCTGCCTGGGAGGGTGGCAGCCCCAGACTTGAGCAAGCAAGATCTTAATGGCAGCACCTA
GCCTTCCTTACCTTGTGGATAGTCCTGCCACTGACCATGACTGTGACCTGACTTTTCAGA
GCTTTGCTTCCATTTCCGAATAAAGAATGAGCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGTGACACCTGGTTCCATGTGGCCTGTGTTGGCTGCAGCATCCAGGCTGCCAAGGAAG
CTGACTTCCGGTGCCCAGGCTGCCGTGTAGGCATCCAGAGCTAGGGCCGGCCACCAACAC
CAGAGGACAGAGCCGGCACCTCCAGGCCATGGGGGGACAGGGAGTCCTAAGAGATGCCTT
CTTCTTCCCTTGCCTTCCCCTGGGGTGGTGGGGGGATGAGTACAGAGGAAGGGTCCATTG
CTATGGATTATCAATTCAAGGCCCTTGTAGCCAAGGTGACAGAAGAGATGGTTTCCTGCC
AAAGATACTGCTGCCTCCAGGAAGTTGCCAGTGAGCTGGAAATCCCCACTGTTATAAGCT
GTTGTGGGTCCTTGTCATGGACACTAGAATGTGTGGTCAGGAGCATTCGACTGCAGAGGG
CCTGCCTGGGAGGGTGGCAGCCCCAGACTTGAGCAAGCAAGATCTTAATGGCAGCACCTA
GCCTTCCTTACCTTGTGGATAGTCCTGCCACTGACCATGACTGTGACCTGACTTTTCAGA
GCTTTGCTTCCATTTCCGAATAAAGAATGAGCAGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-292, - strand, RNAz p=0.974141

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-292, - strand, RNAz p=0.974141

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-470, gnl|bosTau2|chr23 (20485561-20485073)
               

               
               3-470, gnl|Hg17|chr6 (31238372-31238837)
               


               
               472-576, gnl|bosTau2|chr23 (20485028-20484921)
               

               
               472-576, gnl|Hg17|chr6 (31238882-31238988)
               

               
               472-576, gnl|Mm7|chr17 (33614606-33614497)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-470, gnl|bosTau2|chr23 (20485561-20485073)
               

               
               3-470, gnl|Hg17|chr6 (31238372-31238837)
               


               
               472-576, gnl|bosTau2|chr23 (20485028-20484921)
               

               
               472-576, gnl|Hg17|chr6 (31238882-31238988)
               

               
               472-576, gnl|Mm7|chr17 (33614606-33614497)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nbm (0.0993246)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.0993246)

	3-470, gnl\|bosTau2\|chr23 (20485561-20485073)
	3-470, gnl\|Hg17\|chr6 (31238372-31238837)

	472-576, gnl\|bosTau2\|chr23 (20485028-20484921)
	472-576, gnl\|Hg17\|chr6 (31238882-31238988)
	472-576, gnl\|Mm7\|chr17 (33614606-33614497)