Ss1.1-Pey1-56B01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGAGGCTTTTCATTATATTTTTAATGTGCAGATAGCCTGTGAGATTCAGGTGCAGGCA TTGGCAGGAGCAGGTGGTGTAAACAATCTACTTGTATTGGATCTTCAGAAATACAAAGCT TTCACTCACAGTGTAGCAGCATCTGGAGGAGGAGGAGTGAATATGGGTTCCCATCAAAAA TGGAAGATTGGCGAGCTTGAGTTTGAAGGGCTGATGAGGACTCTGGACAATTTGGGATAT AGAACAGGCTATGCTTATAGGCATCCTCTCATTCGAGAAAAGCCTAGGCACAAGAGTGAT GTGGAAATCCCAGCAACTGTGACTGCCTTTTCCTTCGAAGATGATACAGTGCCACTCTCT CCTCTCAAGTACATGGCGCAGAGGCAGCAGCGTGAAAAAACAAGATGGCTGAACTCCCCA AATACCTACATGAAAGTGAATGTGCCTGAGGAGTCCCGGAATGGGGAAACCAGTCCCAGG ACCAAAATCACATGGATGAAAGCGGAGGACTCTTCCAAAGTTAGTAGTGGAACACCTATC AAAATTGAAGATCCAAATCAGTTTGTTCCTTTAAACACAAACCCGAACGAGGTACTAGAA AAGAGGAATAAGATTCGTGAGCAAAATCGGTATGACTTGAAAACAGCAGGACCACAGTCT CAGTTGCTTGCCGGAATTGTTGTGGACAAGCCTCCTTCTACCATGCAGTTTGAAGATGAT GATCATGCCCCCCCGGCCCCTCCCAACCCCTTCAGTCATCTCACAGAAGGAGAACTTGAA GAGTATAAGAAGACAATCGAGCGTAAACAGCAAGGCCTGGAAGATGCTGAGCAGGATTTA CTCTCAGATGACGCTTCATCTGTTTCACAAATTCAGTCTCAAACTCAGTCACCGCAAAAT ATCCCCGAAAAATTAGAAGAAACCCATGAGCTATTTTCCAAGAGCTTCATCTCCATGGAT GTGCCTGTCCTGATAGTAAACGGCAAGGATGACGTGCATGGCATTGAAGATGAGCTTGCC CAGCGAGTGAGTAGGTTAACAACAAGCACCACCATAGAGAACATCGAGATCACCATTAAG TCTCCAGAAAAAATTGAAGAAGTCCCATCACCTGAAGGCTCACCTTCAAAATCACCATCC AAGAAAAAGAAGAAATTCCGCACTCCTTCTTTTCTGAAAAAGAACAAAAAAAAGGAGAAA GTTGAAGCCTAAATAAAGTCTTTTTATAATTCTTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGAGGCTTTTCATTATATTTTTAATGTGCAGATAGCCTGTGAGATTCAGGTGCAGGCA TTGGCAGGAGCAGGTGGTGTAAACAATCTACTTGTATTGGATCTTCAGAAATACAAAGCT TTCACTCACAGTGTAGCAGCATCTGGAGGAGGAGGAGTGAATATGGGTTCCCATCAAAAA TGGAAGATTGGCGAGCTTGAGTTTGAAGGGCTGATGAGGACTCTGGACAATTTGGGATAT AGAACAGGCTATGCTTATAGGCATCCTCTCATTCGAGAAAAGCCTAGGCACAAGAGTGAT GTGGAAATCCCAGCAACTGTGACTGCCTTTTCCTTCGAAGATGATACAGTGCCACTCTCT CCTCTCAAGTACATGGCGCAGAGGCAGCAGCGTGAAAAAACAAGATGGCTGAACTCCCCA AATACCTACATGAAAGTGAATGTGCCTGAGGAGTCCCGGAATGGGGAAACCAGTCCCAGG ACCAAAATCACATGGATGAAAGCGGAGGACTCTTCCAAAGTTAGTAGTGGAACACCTATC AAAATTGAAGATCCAAATCAGTTTGTTCCTTTAAACACAAACCCGAACGAGGTACTAGAA AAGAGGAATAAGATTCGTGAGCAAAATCGGTATGACTTGAAAACAGCAGGACCACAGTCT CAGTTGCTTGCCGGAATTGTTGTGGACAAGCCTCCTTCTACCATGCAGTTTGAAGATGAT GATCATGCCCCCCCGGCCCCTCCCAACCCCTTCAGTCATCTCACAGAAGGAGAACTTGAA GAGTATAAGAAGACAATCGAGCGTAAACAGCAAGGCCTGGAAGATGCTGAGCAGGATTTA CTCTCAGATGACGCTTCATCTGTTTCACAAATTCAGTCTCAAACTCAGTCACCGCAAAAT ATCCCCGAAAAATTAGAAGAAACCCATGAGCTATTTTCCAAGAGCTTCATCTCCATGGAT GTGCCTGTCCTGATAGTAAACGGCAAGGATGACGTGCATGGCATTGAAGATGAGCTTGCC CAGCGAGTGAGTAGGTTAACAACAAGCACCACCATAGAGAACATCGAGATCACCATTAAG TCTCCAGAAAAAATTGAAGAAGTCCCATCACCTGAAGGCTCACCTTCAAAATCACCATCC AAGAAAAAGAAGAAATTCCGCACTCCTTCTTTTCTGAAAAAGAACAAAAAAAAGGAGAAA GTTGAAGCCTAAATAAAGTCTTTTTATAATTCTTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1077-1196, - strand, RNAz p=0.924962 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1077-1196, - strand, RNAz p=0.924962 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 234-492, gnl|bosTau2|chr11 (11596908-11597166) | |
| 234-492, gnl|canFam2|chr10 (72221960-72222255) | |
| 234-492, gnl|danRer3|chr5 (4528161-4528417) | |
| 234-492, gnl|dasNov1|scaffold_4856 (82742-82446) | |
| 234-492, gnl|echTel1|scaffold_230924 (12052-12342) | |
| 234-492, gnl|fr1|chrUn (108015632-108015347) | |
| 234-492, gnl|galGal2|chr6 (24865590-24865314) | |
| 234-492, gnl|hg17|chr2 (70817489-70817785) | |
| 234-492, gnl|Hg17|chr2 (70817749-70817491) | |
| 234-492, gnl|loxAfr1|scaffold_287 (106731-106436) | |
| 234-492, gnl|mm7|chr6 (86181394-86181101) | |
| 234-492, gnl|Mm7|chr6 (86181132-86181390) | |
| 234-492, gnl|monDom2|scaffold_1 (93214296-93214001) | |
| 234-492, gnl|oryCun1|scaffold_204812 (3621-3912) | |
| 234-492, gnl|panTro1|chr12 (73145020-73145316) | |
| 234-492, gnl|rheMac2|chr13 (70984085-70984381) | |
| 234-492, gnl|rn3|chr4 (120508055-120507761) | |
| 234-492, gnl|tetNig1|chr12 (11356717-11356467) | |
| 234-492, gnl|xenTro1|scaffold_110 (1842467-1842752) | |
| 493-612, gnl|bosTau2|chr26 (19611602-19611483) | |
| 493-612, gnl|Hg17|chr10 (111875574-111875693) | |
| 493-612, gnl|Mm7|chr19 (53139037-53139156) | |
| 700-823, gnl|bosTau2|chr26 (19607619-19607496) | |
| 700-823, gnl|canFam2|chr28 (24523382-24523525) | |
| 700-823, gnl|danRer3|chr5 (4489686-4489536) | |
| 700-823, gnl|echTel1|scaffold_315150 (33555-33698) | |
| 700-823, gnl|fr1|chrUn (112128665-112128494) | |
| 700-823, gnl|galGal2|chr6 (24869051-24869194) | |
| 700-823, gnl|hg17|chr10 (111880098-111880241) | |
| 700-823, gnl|Hg17|chr10 (111880111-111880234) | |
| 700-823, gnl|loxAfr1|scaffold_1027 (14733-14591) | |
| 700-823, gnl|mm7|chr19 (53143125-53143268) | |
| 700-823, gnl|Mm7|chr19 (53143138-53143261) | |
| 700-823, gnl|monDom2|scaffold_14 (53267627-53267484) | |
| 700-823, gnl|oryCun1|scaffold_204812 (494-351) | |
| 700-823, gnl|panTro1|chr8 (113789079-113789222) | |
| 700-823, gnl|rheMac2|chr9 (109817289-109817432) | |
| 700-823, gnl|rn3|chr1 (259563411-259563268) | |
| 700-823, gnl|tetNig1|chr17 (7081455-7081591) | |
| 700-823, gnl|xenTro1|scaffold_110 (1839079-1838958) | |
| 918-1235, gnl|bosTau2|chr26 (19605103-19604786) | |
| 918-1235, gnl|Hg17|chr10 (111883072-111883389) | |
| 918-1235, gnl|Mm7|chr19 (53145630-53145947) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 234-492, gnl|bosTau2|chr11 (11596908-11597166) | |
| 234-492, gnl|canFam2|chr10 (72221960-72222255) | |
| 234-492, gnl|danRer3|chr5 (4528161-4528417) | |
| 234-492, gnl|dasNov1|scaffold_4856 (82742-82446) | |
| 234-492, gnl|echTel1|scaffold_230924 (12052-12342) | |
| 234-492, gnl|fr1|chrUn (108015632-108015347) | |
| 234-492, gnl|galGal2|chr6 (24865590-24865314) | |
| 234-492, gnl|hg17|chr2 (70817489-70817785) | |
| 234-492, gnl|Hg17|chr2 (70817749-70817491) | |
| 234-492, gnl|loxAfr1|scaffold_287 (106731-106436) | |
| 234-492, gnl|mm7|chr6 (86181394-86181101) | |
| 234-492, gnl|Mm7|chr6 (86181132-86181390) | |
| 234-492, gnl|monDom2|scaffold_1 (93214296-93214001) | |
| 234-492, gnl|oryCun1|scaffold_204812 (3621-3912) | |
| 234-492, gnl|panTro1|chr12 (73145020-73145316) | |
| 234-492, gnl|rheMac2|chr13 (70984085-70984381) | |
| 234-492, gnl|rn3|chr4 (120508055-120507761) | |
| 234-492, gnl|tetNig1|chr12 (11356717-11356467) | |
| 234-492, gnl|xenTro1|scaffold_110 (1842467-1842752) | |
| 493-612, gnl|bosTau2|chr26 (19611602-19611483) | |
| 493-612, gnl|Hg17|chr10 (111875574-111875693) | |
| 493-612, gnl|Mm7|chr19 (53139037-53139156) | |
| 700-823, gnl|bosTau2|chr26 (19607619-19607496) | |
| 700-823, gnl|canFam2|chr28 (24523382-24523525) | |
| 700-823, gnl|danRer3|chr5 (4489686-4489536) | |
| 700-823, gnl|echTel1|scaffold_315150 (33555-33698) | |
| 700-823, gnl|fr1|chrUn (112128665-112128494) | |
| 700-823, gnl|galGal2|chr6 (24869051-24869194) | |
| 700-823, gnl|hg17|chr10 (111880098-111880241) | |
| 700-823, gnl|Hg17|chr10 (111880111-111880234) | |
| 700-823, gnl|loxAfr1|scaffold_1027 (14733-14591) | |
| 700-823, gnl|mm7|chr19 (53143125-53143268) | |
| 700-823, gnl|Mm7|chr19 (53143138-53143261) | |
| 700-823, gnl|monDom2|scaffold_14 (53267627-53267484) | |
| 700-823, gnl|oryCun1|scaffold_204812 (494-351) | |
| 700-823, gnl|panTro1|chr8 (113789079-113789222) | |
| 700-823, gnl|rheMac2|chr9 (109817289-109817432) | |
| 700-823, gnl|rn3|chr1 (259563411-259563268) | |
| 700-823, gnl|tetNig1|chr17 (7081455-7081591) | |
| 700-823, gnl|xenTro1|scaffold_110 (1839079-1838958) | |
| 918-1235, gnl|bosTau2|chr26 (19605103-19604786) | |
| 918-1235, gnl|Hg17|chr10 (111883072-111883389) | |
| 918-1235, gnl|Mm7|chr19 (53145630-53145947) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) |