Ss1.1-Pey1-61E07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTCCGGCCGCCGCCGCCACTGCCGCTGCTTCGCGGGCTGGAGGGCCCAGGCGTCCCTG GGCGAGCGGAGGCTGCGGGTGGGAGCCTTCGTGGGCACTGCGGAGCGGGCCGGGGGAGGC CGGGATGGAGCCCCCCGGAGTTGCCTGAAGCGAGTGGGCCGGGCTCCGGAGCCTCCAGGC AGGATCTCGGGGCCTCCCGAGGTTGCAGCGGATGGTGGAGGGCGGCGCAGACATGGCTCA CCTCAGGGGCTTTGCCAACCAGCACCCCCGCGTGGACCCCGAGGAGCTCTTCACCAAGCT CGACCGCATCGGCAAGGGCTCGTTCGGCGAGGTGTACAAGGGCATCGACAACCGCACCAA GGAGGTGGTGGCCATCAAGACCATCGACCTGGAGGAGGCCGAGGACGAGATCGAGGACAT CCAGCAGGAGATCACGGTGCTCAGCCAGTGCGACAGCCCCTACATCACGCGCTACTTCGG CTCCTACCTGAAGGGCACGAAGCTGTGGATCATCATGGAGTACCTGGGCGGCGGCTCTGC CTTGGACCTGCTTAAGCCGGGGCCCCTGGAGGAGACTTACATCGCCACGATCCTGCGGGA GATCCTGAGGGGCCTGGATTACCTGCACTCGGAGCGCAAGATCCACCGAGACATCAAAGC TGCCAATGTGCTGCTCTCGGAGCAGGGCGACGTGAAGCTGGCGGACTTCGGCGTGGCGGG GCAGCTCACGGACACGCAAATCAAGAGGAACACGTTTGTGGGCACCCCCTTCTGGATGGC GCCCGAGGTCATCAAGCAGTCGGCCTATGACTTCAAGGCGGACATCTGGTCGCTGGGGAT CACGGCCATCGAGCTGGCCAAAGGCGAGCCCCCGAACTCTGACCTCCACCCCATGCGCGT CCTGTTCCTGATCCCCAAGAACAGCCCCCCCACACTGGAGGGCCACCACAGCAAGCCCTT CAAGGAGTTCGTGGAGGCCTGCCTCAACAAGGACCCCCGATTTCGGCCCACCGCGAAGGA GCTGCTGAAGCACAAGTTCATCACGCGCTACACCAAGAAGACCTCCTTCCTCACCGAGCT CATCGACCGCTACAAGCGCTGGAGGTCGGAGGGCCACGGCGAGGAGTCCAGCTCTGAGGA CTCGGACATCGACGCAGATGCCGAGGATGGAGAGCAGGGCCCCATCTGGACCTTCCCCCC CACCATCCGGCCGAGCCCGCACGGCAAGCTGCACAAGGGGACGGCCTTGCACGGCCCGCA GAAGTCGGCAGAGCCAGTCAAGAGGCAGCCGAGGTCCCAGTGCCTGTCCACGCTGGTCCG GCCTGTCTTCGGAGAGCTCAAAGAGAAGCACAGGCAGAACGGCGGCGGCGTGGGGGCGCT GGAGGAGCTGGAGAACGCCTTCAGCCTGGCCGAGGAGTCCTGCCCCGGCATCTCGGACAA GCTGATGGCCCACTTGGTGGAGCGCGTGCAGAGGTTCTCCCACAGCAGAAACCACCTGAC GTCGACCCGCTGACGCTGCTGCTCTTGGCGCCGCCGGGGAGGGGTCTCTGTCCTGCGCGC CGCCAGGACTGTGCTGACTCGGAGCCCCGCTGCTGTCCTGGCCGGGTCCCACCCCCCTCC ACCCCCGCAGAGGGCGGTCCCACTTCCACGTCCCTCCCGGTCGGACCAAGGCCATGCTCG GCAGCGAGGAGGTGGCCGTGTGGCCGCCCAGACCGCGGGGCAGAGACCTCGCTGAGCAGG TGTGCCGCCGCCCAGCCGGGCCTGGCCTCAAAAGGCCGTAGATTTGCCTTGTGTCAGACC AGGTACCGCGTTGTCTTCTAAGTACTCGTGTCAGAATGTTTTGTTTTTTAAGAAAACCCG CCTTCCTTGCTTCCCTGGGCGTCCGAGGTGAAGGTGTTAGTTTTCACAGAACCGTGAGGG CTCCTGCTGCTTTCAATAAAGACCTGAATGACGAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAGCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTCCGGCCGCCGCCGCCACTGCCGCTGCTTCGCGGGCTGGAGGGCCCAGGCGTCCCTG GGCGAGCGGAGGCTGCGGGTGGGAGCCTTCGTGGGCACTGCGGAGCGGGCCGGGGGAGGC CGGGATGGAGCCCCCCGGAGTTGCCTGAAGCGAGTGGGCCGGGCTCCGGAGCCTCCAGGC AGGATCTCGGGGCCTCCCGAGGTTGCAGCGGATGGTGGAGGGCGGCGCAGACATGGCTCA CCTCAGGGGCTTTGCCAACCAGCACCCCCGCGTGGACCCCGAGGAGCTCTTCACCAAGCT CGACCGCATCGGCAAGGGCTCGTTCGGCGAGGTGTACAAGGGCATCGACAACCGCACCAA GGAGGTGGTGGCCATCAAGACCATCGACCTGGAGGAGGCCGAGGACGAGATCGAGGACAT CCAGCAGGAGATCACGGTGCTCAGCCAGTGCGACAGCCCCTACATCACGCGCTACTTCGG CTCCTACCTGAAGGGCACGAAGCTGTGGATCATCATGGAGTACCTGGGCGGCGGCTCTGC CTTGGACCTGCTTAAGCCGGGGCCCCTGGAGGAGACTTACATCGCCACGATCCTGCGGGA GATCCTGAGGGGCCTGGATTACCTGCACTCGGAGCGCAAGATCCACCGAGACATCAAAGC TGCCAATGTGCTGCTCTCGGAGCAGGGCGACGTGAAGCTGGCGGACTTCGGCGTGGCGGG GCAGCTCACGGACACGCAAATCAAGAGGAACACGTTTGTGGGCACCCCCTTCTGGATGGC GCCCGAGGTCATCAAGCAGTCGGCCTATGACTTCAAGGCGGACATCTGGTCGCTGGGGAT CACGGCCATCGAGCTGGCCAAAGGCGAGCCCCCGAACTCTGACCTCCACCCCATGCGCGT CCTGTTCCTGATCCCCAAGAACAGCCCCCCCACACTGGAGGGCCACCACAGCAAGCCCTT CAAGGAGTTCGTGGAGGCCTGCCTCAACAAGGACCCCCGATTTCGGCCCACCGCGAAGGA GCTGCTGAAGCACAAGTTCATCACGCGCTACACCAAGAAGACCTCCTTCCTCACCGAGCT CATCGACCGCTACAAGCGCTGGAGGTCGGAGGGCCACGGCGAGGAGTCCAGCTCTGAGGA CTCGGACATCGACGCAGATGCCGAGGATGGAGAGCAGGGCCCCATCTGGACCTTCCCCCC CACCATCCGGCCGAGCCCGCACGGCAAGCTGCACAAGGGGACGGCCTTGCACGGCCCGCA GAAGTCGGCAGAGCCAGTCAAGAGGCAGCCGAGGTCCCAGTGCCTGTCCACGCTGGTCCG GCCTGTCTTCGGAGAGCTCAAAGAGAAGCACAGGCAGAACGGCGGCGGCGTGGGGGCGCT GGAGGAGCTGGAGAACGCCTTCAGCCTGGCCGAGGAGTCCTGCCCCGGCATCTCGGACAA GCTGATGGCCCACTTGGTGGAGCGCGTGCAGAGGTTCTCCCACAGCAGAAACCACCTGAC GTCGACCCGCTGACGCTGCTGCTCTTGGCGCCGCCGGGGAGGGGTCTCTGTCCTGCGCGC CGCCAGGACTGTGCTGACTCGGAGCCCCGCTGCTGTCCTGGCCGGGTCCCACCCCCCTCC ACCCCCGCAGAGGGCGGTCCCACTTCCACGTCCCTCCCGGTCGGACCAAGGCCATGCTCG GCAGCGAGGAGGTGGCCGTGTGGCCGCCCAGACCGCGGGGCAGAGACCTCGCTGAGCAGG TGTGCCGCCGCCCAGCCGGGCCTGGCCTCAAAAGGCCGTAGATTTGCCTTGTGTCAGACC AGGTACCGCGTTGTCTTCTAAGTACTCGTGTCAGAATGTTTTGTTTTTTAAGAAAACCCG CCTTCCTTGCTTCCCTGGGCGTCCGAGGTGAAGGTGTTAGTTTTCACAGAACCGTGAGGG CTCCTGCTGCTTTCAATAAAGACCTGAATGACGAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAGCAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 489-1148, gnl|bosTau2|chr12 (42346681-42347340) | |
| 489-1148, gnl|Hg17|chrX (135107944-135103730) | |
| 489-1148, gnl|Mm7|chr14 (115707246-115699047) | |
| 1151-1264, gnl|bosTau2|chr16 (44011950-44012063) | |
| 1151-1264, gnl|Hg17|chr2 (242157753-242157640) | |
| 1151-1264, gnl|Mm7|chr1 (93532956-93532843) | |
| 1335-1475, gnl|bosTau2|chr16 (44013407-44013547) | |
| 1335-1475, gnl|canFam2|chr25 (54375904-54376062) | |
| 1335-1475, gnl|danRer3|chrUn (33149267-33149118) | |
| 1335-1475, gnl|dasNov1|scaffold_28934 (8259-8419) | |
| 1335-1475, gnl|echTel1|scaffold_196770 (3317-3466) | |
| 1335-1475, gnl|fr1|chrUn (187453506-187453657) | |
| 1335-1475, gnl|galGal2|chr9 (8548291-8548127) | |
| 1335-1475, gnl|hg17|chr2 (242155792-242155954) | |
| 1335-1475, gnl|Hg17|chr2 (242155941-242155801) | |
| 1335-1475, gnl|loxAfr1|scaffold_13624 (3895-3745) | |
| 1335-1475, gnl|mm7|chr1 (93531195-93531356) | |
| 1335-1475, gnl|Mm7|chr1 (93531343-93531203) | |
| 1335-1475, gnl|monDom2|scaffold_98 (3619799-3619955) | |
| 1335-1475, gnl|oryCun1|scaffold_28850 (2478-2631) | |
| 1335-1475, gnl|panTro1|chr13 (133632064-133632226) | |
| 1335-1475, gnl|rheMac2|chr12 (105425796-105425958) | |
| 1335-1475, gnl|rn3|chr9 (93113906-93114067) | |
| 1335-1475, gnl|tetNig1|chr15 (3016541-3016692) | |
| 1335-1475, gnl|xenTro1|scaffold_209 (1679630-1679481) | |
| 1708-1948, gnl|bosTau2|chr16 (44013930-44014180) | |
| 1708-1948, gnl|Hg17|chr2 (242154736-242154431) | |
| 1708-1948, gnl|Mm7|chr1 (93530001-93529721) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 489-1148, gnl|bosTau2|chr12 (42346681-42347340) | |
| 489-1148, gnl|Hg17|chrX (135107944-135103730) | |
| 489-1148, gnl|Mm7|chr14 (115707246-115699047) | |
| 1151-1264, gnl|bosTau2|chr16 (44011950-44012063) | |
| 1151-1264, gnl|Hg17|chr2 (242157753-242157640) | |
| 1151-1264, gnl|Mm7|chr1 (93532956-93532843) | |
| 1335-1475, gnl|bosTau2|chr16 (44013407-44013547) | |
| 1335-1475, gnl|canFam2|chr25 (54375904-54376062) | |
| 1335-1475, gnl|danRer3|chrUn (33149267-33149118) | |
| 1335-1475, gnl|dasNov1|scaffold_28934 (8259-8419) | |
| 1335-1475, gnl|echTel1|scaffold_196770 (3317-3466) | |
| 1335-1475, gnl|fr1|chrUn (187453506-187453657) | |
| 1335-1475, gnl|galGal2|chr9 (8548291-8548127) | |
| 1335-1475, gnl|hg17|chr2 (242155792-242155954) | |
| 1335-1475, gnl|Hg17|chr2 (242155941-242155801) | |
| 1335-1475, gnl|loxAfr1|scaffold_13624 (3895-3745) | |
| 1335-1475, gnl|mm7|chr1 (93531195-93531356) | |
| 1335-1475, gnl|Mm7|chr1 (93531343-93531203) | |
| 1335-1475, gnl|monDom2|scaffold_98 (3619799-3619955) | |
| 1335-1475, gnl|oryCun1|scaffold_28850 (2478-2631) | |
| 1335-1475, gnl|panTro1|chr13 (133632064-133632226) | |
| 1335-1475, gnl|rheMac2|chr12 (105425796-105425958) | |
| 1335-1475, gnl|rn3|chr9 (93113906-93114067) | |
| 1335-1475, gnl|tetNig1|chr15 (3016541-3016692) | |
| 1335-1475, gnl|xenTro1|scaffold_209 (1679630-1679481) | |
| 1708-1948, gnl|bosTau2|chr16 (44013930-44014180) | |
| 1708-1948, gnl|Hg17|chr2 (242154736-242154431) | |
| 1708-1948, gnl|Mm7|chr1 (93530001-93529721) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| nep (0.551775) | |
| ebs (0.473205) | |
| eye (0.341006) | |
| jej (0.296765) | |
| cga (0.279096) | |
| cov (0.264306) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| col (0.195008) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.551775) | |
| ebs (0.473205) | |
| eye (0.341006) | |
| jej (0.296765) | |
| cga (0.279096) | |
| cov (0.264306) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| col (0.195008) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) |