Non-Coding RNA Search

Ss1.1-Pig1-100G09.5

Sequence:


               
               AAAAAACAAAAAATGAGCAAGCGAGACGCCCCTTCCGTTTTATGATCACCAAGCTGCAAG
CAAATAAATCGGCTGGTCCCACTGCAATCTTCTGCACTCGAGTGCCAAGAGAGCCTGTTC
CTATGAATTACTGAAGCCATAAAGAAAAAATTTTTTACATTAAAACTTTACCATAATGAG
GTGTTACCACATCTGCAAAGTCCCTGGAAGAGTGATGGGGATTCGAGTGCTTCGTTTCTC
CCTGGTGGTCATCCTTGTGTTACTGCTGGTGGCTGGGGCTCTGACCACTTTGCTTCCTAA
TATCAAAGAAGACAAGATGCTCGCTTTGCGAAGGGAGATCAAATCCCAGGGCAAGTCCCC
GCTGGATTCCTTCACTCTCATAATGCAGACGTACAACAGGACAGACCTCCTGCTGAGACT
TTTAAATCACTACCAGGCAGTACCGAACCTGCACAAAGTGATCGTGGTGTGGAACAACGT
CGGGGAGAAGGGGCCGGATGAGCTGTGGAATTCCCTAGGGCCTCACCCTGTCCCCGTCAT
CTTCAAACCGCAGACAGCAAACAGGATGAGAAATCGACTGCAGGTCTTTCCTGAACTGGA
AACCAGTGCGGTGCTAATGGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAACAAAAAATGAGCAAGCGAGACGCCCCTTCCGTTTTATGATCACCAAGCTGCAAG
CAAATAAATCGGCTGGTCCCACTGCAATCTTCTGCACTCGAGTGCCAAGAGAGCCTGTTC
CTATGAATTACTGAAGCCATAAAGAAAAAATTTTTTACATTAAAACTTTACCATAATGAG
GTGTTACCACATCTGCAAAGTCCCTGGAAGAGTGATGGGGATTCGAGTGCTTCGTTTCTC
CCTGGTGGTCATCCTTGTGTTACTGCTGGTGGCTGGGGCTCTGACCACTTTGCTTCCTAA
TATCAAAGAAGACAAGATGCTCGCTTTGCGAAGGGAGATCAAATCCCAGGGCAAGTCCCC
GCTGGATTCCTTCACTCTCATAATGCAGACGTACAACAGGACAGACCTCCTGCTGAGACT
TTTAAATCACTACCAGGCAGTACCGAACCTGCACAAAGTGATCGTGGTGTGGAACAACGT
CGGGGAGAAGGGGCCGGATGAGCTGTGGAATTCCCTAGGGCCTCACCCTGTCCCCGTCAT
CTTCAAACCGCAGACAGCAAACAGGATGAGAAATCGACTGCAGGTCTTTCCTGAACTGGA
AACCAGTGCGGTGCTAATGGTGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               418-537, - strand, RNAz p=0.516559

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               418-537, - strand, RNAz p=0.516559

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-109, gnl|bosTau2|chr3 (38015175-38015284)
               

               
               1-109, gnl|canFam2|chr6 (52285210-52284862)
               

               
               1-109, gnl|echTel1|scaffold_288445 (78599-78913)
               

               
               1-109, gnl|hg17|chr1 (101072018-101072325)
               

               
               1-109, gnl|Hg17|chr1 (101072311-101072205)
               

               
               1-109, gnl|loxAfr1|scaffold_258 (37354-37682)
               

               
               1-109, gnl|mm7|chr3 (115783637-115783340)
               

               
               1-109, gnl|Mm7|chr3 (115783349-115783455)
               

               
               1-109, gnl|monDom2|scaffold_0 (18049660-18049331)
               

               
               1-109, gnl|oryCun1|scaffold_180345 (2378-2060)
               

               
               1-109, gnl|panTro1|chr1 (100118872-100119178)
               

               
               1-109, gnl|rheMac2|chr1 (103954429-103954764)
               

               
               1-109, gnl|rn3|chr2 (212127021-212126720)
               


               
               179-605, gnl|bosTau2|chr3 (38026820-38027246)
               

               
               179-605, gnl|Hg17|chr1 (101055482-101055056)
               

               
               179-605, gnl|Mm7|chr3 (115798918-115799344)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-109, gnl|bosTau2|chr3 (38015175-38015284)
               

               
               1-109, gnl|canFam2|chr6 (52285210-52284862)
               

               
               1-109, gnl|echTel1|scaffold_288445 (78599-78913)
               

               
               1-109, gnl|hg17|chr1 (101072018-101072325)
               

               
               1-109, gnl|Hg17|chr1 (101072311-101072205)
               

               
               1-109, gnl|loxAfr1|scaffold_258 (37354-37682)
               

               
               1-109, gnl|mm7|chr3 (115783637-115783340)
               

               
               1-109, gnl|Mm7|chr3 (115783349-115783455)
               

               
               1-109, gnl|monDom2|scaffold_0 (18049660-18049331)
               

               
               1-109, gnl|oryCun1|scaffold_180345 (2378-2060)
               

               
               1-109, gnl|panTro1|chr1 (100118872-100119178)
               

               
               1-109, gnl|rheMac2|chr1 (103954429-103954764)
               

               
               1-109, gnl|rn3|chr2 (212127021-212126720)
               


               
               179-605, gnl|bosTau2|chr3 (38026820-38027246)
               

               
               179-605, gnl|Hg17|chr1 (101055482-101055056)
               

               
               179-605, gnl|Mm7|chr3 (115798918-115799344)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ebs (0.236602)
               

               
               tes (0.207814)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               tes (0.207814)

	1-109, gnl\|bosTau2\|chr3 (38015175-38015284)
	1-109, gnl\|canFam2\|chr6 (52285210-52284862)
	1-109, gnl\|echTel1\|scaffold_288445 (78599-78913)
	1-109, gnl\|hg17\|chr1 (101072018-101072325)
	1-109, gnl\|Hg17\|chr1 (101072311-101072205)
	1-109, gnl\|loxAfr1\|scaffold_258 (37354-37682)
	1-109, gnl\|mm7\|chr3 (115783637-115783340)
	1-109, gnl\|Mm7\|chr3 (115783349-115783455)
	1-109, gnl\|monDom2\|scaffold_0 (18049660-18049331)
	1-109, gnl\|oryCun1\|scaffold_180345 (2378-2060)
	1-109, gnl\|panTro1\|chr1 (100118872-100119178)
	1-109, gnl\|rheMac2\|chr1 (103954429-103954764)
	1-109, gnl\|rn3\|chr2 (212127021-212126720)

	179-605, gnl\|bosTau2\|chr3 (38026820-38027246)
	179-605, gnl\|Hg17\|chr1 (101055482-101055056)
	179-605, gnl\|Mm7\|chr3 (115798918-115799344)