Ss1.1-Pig1-100I06.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGGCGGCGGCGGCGGGGTGGCGGCGACGGCGACATGGAGAGCGGGGCCTATGGCGCGG CCAAGGCGGGTGGCTCCTTCGACCTGCTGCGCTTCCTGACGCAGCCGCAGGTGGTGGTGC GCGCCGTGTGCCTGGTCTTGGCCTTGATCGTGTTCTCCTGCATCTTCGGGGAGGGCTACA GCAACAGCCACAAGTCCGGAGAGCAGTACTGCGTGTTCAACCGCAACGACGACGCCTGCC GCTATGGCAGCGCCATCGGGGTGCTGGCCTTCCTGGGCTCCGCCTTCTTCTTCGTGGTGG ACATCTATTTCCCCCAGATCAGCAACGCCACTGACCGCAAGTACCTGGTCATCGGTGACC TGCTCTTCTCAGCTCTCTGGACCTTCCTGTGGTTCGTTGGCTTCTGCTTCCTCACCAATC AGTGGGCAGCCACCAAGGTGGAAGATGTGCTGGTGGGAGCCGACTCGGCCCGAGCAGCCA TCACCTTCAGCTTCTTTTCCGTCTTCTCGTGGGGCCTGCTGGCCTCCCTGGCCTACCAGC GCTACAAGGCCGGAGTGGATGACTTCATCCAGAACTACGTGGACCCCACTCCAGACCCCA GCACAGCCTACGCCTCCTACCCGGGCGTGCCCGCGGACAACTACCAGCAGCCGCCCTTCA CCCAGAACGCCGAGACCTCCGAGGGCTACCAGCCACCCCCCGTGTACTGAGCTGCAGCTG AGGATGTGAAGGGGAGCAGGGGGCTGCTGGCCCCTCTTGTTTCCCCCCCACCCATGTGGT TGGAGCCCCTGCCTCCCCGCTGGTGCCCGAGGCCCACGGGCGTCACCCACTACTCCCTCA GGGCTGGTTTTAGCTGTGTGTAGCTAGATGACTCCTGCCGTTGCTCTTAGTGACCCCCAG CCCCGCCGGAGTGCCTGACCCGCTCTTCTGACAAGTGCCTTAGCTTTTCCCCAGCCCGCA GGAGCCGGGGCCCACGGCCTAGCCTGGGCTGCCGCAGTCACAGCCACTTGGGCTTCCCTG CCAAAGACGAGGCTGCGGGGCCTTCCCTGGGGCTCCCCTCCTCCTCACTCAGGTTCTTTT GCCCCCAGCCCCCAGCTCACTGCTGCTGAGTCTGCGCGCTCTTGGGTCTGGGGTCCCGAC CCTGTGCCAGTGCCCAAGGGGGCCACCTTCCTGAGAGCCCAGGGGCAGGGCTGGTGCCCA CCCTAGGGGCTGGGGCCGCACTTCCCTGCCTCTGCCCCCATCCCAGGGCCAGTGCCTGAC AACACCCAGCTTTATGTAAATATCCTGCCACCGTTAGCTGTGGGCACCCCACAGCCCCCA GGCTGTGCTGAATGTATTACAAAGCCCTGGGGAAGACGCACAGCACCCCGACTGTTAGAC TGATTTTGGATGGAATAAATATTTTTCTCATTCATAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGGCGGCGGCGGCGGGGTGGCGGCGACGGCGACATGGAGAGCGGGGCCTATGGCGCGG CCAAGGCGGGTGGCTCCTTCGACCTGCTGCGCTTCCTGACGCAGCCGCAGGTGGTGGTGC GCGCCGTGTGCCTGGTCTTGGCCTTGATCGTGTTCTCCTGCATCTTCGGGGAGGGCTACA GCAACAGCCACAAGTCCGGAGAGCAGTACTGCGTGTTCAACCGCAACGACGACGCCTGCC GCTATGGCAGCGCCATCGGGGTGCTGGCCTTCCTGGGCTCCGCCTTCTTCTTCGTGGTGG ACATCTATTTCCCCCAGATCAGCAACGCCACTGACCGCAAGTACCTGGTCATCGGTGACC TGCTCTTCTCAGCTCTCTGGACCTTCCTGTGGTTCGTTGGCTTCTGCTTCCTCACCAATC AGTGGGCAGCCACCAAGGTGGAAGATGTGCTGGTGGGAGCCGACTCGGCCCGAGCAGCCA TCACCTTCAGCTTCTTTTCCGTCTTCTCGTGGGGCCTGCTGGCCTCCCTGGCCTACCAGC GCTACAAGGCCGGAGTGGATGACTTCATCCAGAACTACGTGGACCCCACTCCAGACCCCA GCACAGCCTACGCCTCCTACCCGGGCGTGCCCGCGGACAACTACCAGCAGCCGCCCTTCA CCCAGAACGCCGAGACCTCCGAGGGCTACCAGCCACCCCCCGTGTACTGAGCTGCAGCTG AGGATGTGAAGGGGAGCAGGGGGCTGCTGGCCCCTCTTGTTTCCCCCCCACCCATGTGGT TGGAGCCCCTGCCTCCCCGCTGGTGCCCGAGGCCCACGGGCGTCACCCACTACTCCCTCA GGGCTGGTTTTAGCTGTGTGTAGCTAGATGACTCCTGCCGTTGCTCTTAGTGACCCCCAG CCCCGCCGGAGTGCCTGACCCGCTCTTCTGACAAGTGCCTTAGCTTTTCCCCAGCCCGCA GGAGCCGGGGCCCACGGCCTAGCCTGGGCTGCCGCAGTCACAGCCACTTGGGCTTCCCTG CCAAAGACGAGGCTGCGGGGCCTTCCCTGGGGCTCCCCTCCTCCTCACTCAGGTTCTTTT GCCCCCAGCCCCCAGCTCACTGCTGCTGAGTCTGCGCGCTCTTGGGTCTGGGGTCCCGAC CCTGTGCCAGTGCCCAAGGGGGCCACCTTCCTGAGAGCCCAGGGGCAGGGCTGGTGCCCA CCCTAGGGGCTGGGGCCGCACTTCCCTGCCTCTGCCCCCATCCCAGGGCCAGTGCCTGAC AACACCCAGCTTTATGTAAATATCCTGCCACCGTTAGCTGTGGGCACCCCACAGCCCCCA GGCTGTGCTGAATGTATTACAAAGCCCTGGGGAAGACGCACAGCACCCCGACTGTTAGAC TGATTTTGGATGGAATAAATATTTTTCTCATTCATAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 215-1350, + strand, RNAz p=0.568389 | |
| 253-372, + strand, RNAz p=0.98363 | |
| 514-632, - strand, RNAz p=0.643598 | |
| 922-1012, - strand, RNAz p=0.51426 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 215-1350, + strand, RNAz p=0.568389 | |
| 253-372, + strand, RNAz p=0.98363 | |
| 514-632, - strand, RNAz p=0.643598 | |
| 922-1012, - strand, RNAz p=0.51426 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 134-372, gnl|bosTau2|chr19 (47869850-47869612) | |
| 134-372, gnl|canFam2|chr9 (5971745-5971563) | |
| 134-372, gnl|danRer3|chr1 (38769805-38769979) | |
| 134-372, gnl|dasNov1|scaffold_22712 (15530-15343) | |
| 134-372, gnl|echTel1|scaffold_308769 (120445-120619) | |
| 134-372, gnl|fr1|chrUn (79813065-79812871) | |
| 134-372, gnl|galGal2|chr1 (47388952-47388770) | |
| 134-372, gnl|hg17|chr17 (73678480-73678662) | |
| 134-372, gnl|Hg17|chr17 (73678492-73678730) | |
| 134-372, gnl|loxAfr1|scaffold_49406 (6899-7092) | |
| 134-372, gnl|mm7|chr11 (117921495-117921673) | |
| 134-372, gnl|Mm7|chr11 (117921503-117921741) | |
| 134-372, gnl|monDom2|scaffold_18 (7058552-7058734) | |
| 134-372, gnl|oryCun1|scaffold_121515 (836-654) | |
| 134-372, gnl|panTro1|chr19 (77228913-77229095) | |
| 134-372, gnl|rheMac2|chr16 (73463922-73464104) | |
| 134-372, gnl|rn3|chr7 (118380034-118380216) | |
| 134-372, gnl|tetNig1|chr18 (2195661-2195849) | |
| 134-372, gnl|xenTro1|scaffold_293 (4133-4315) | |
| 514-736, gnl|bosTau2|chr19 (47869034-47868813) | |
| 514-736, gnl|Hg17|chr17 (73679416-73679637) | |
| 514-736, gnl|Mm7|chr11 (117922324-117922529) | |
| 922-1045, gnl|bosTau2|chr19 (47868718-47868604) | |
| 922-1045, gnl|hg17|chr16 (60984108-60984564) | |
| 922-1045, gnl|Hg17|chr17 (73679848-73680019) | |
| 922-1045, gnl|loxAfr1|scaffold_12748 (609-1110) | |
| 922-1045, gnl|panTro1|chr18 (55144433-55144917) | |
| 922-1045, gnl|rheMac2|chr20 (60697662-60698115) | |
| 1095-1417, gnl|bosTau2|chr19 (47868504-47868172) | |
| 1095-1417, gnl|canFam2|chr9 (5969758-5970062) | |
| 1095-1417, gnl|echTel1|scaffold_277153 (7645-7882) | |
| 1095-1417, gnl|Hg17|chr17 (73680086-73680397) | |
| 1095-1417, gnl|hg17|chr9 (77994213-77994488) | |
| 1095-1417, gnl|loxAfr1|scaffold_12748 (1173-916) | |
| 1095-1417, gnl|mm7|chr11 (117923325-117923066) | |
| 1095-1417, gnl|Mm7|chr11 (117923035-117923331) | |
| 1095-1417, gnl|oryCun1|scaffold_129959 (8100-8359) | |
| 1095-1417, gnl|panTro1|chr11 (61879673-61879947) | |
| 1095-1417, gnl|rheMac2|chr15 (86853911-86854186) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 134-372, gnl|bosTau2|chr19 (47869850-47869612) | |
| 134-372, gnl|canFam2|chr9 (5971745-5971563) | |
| 134-372, gnl|danRer3|chr1 (38769805-38769979) | |
| 134-372, gnl|dasNov1|scaffold_22712 (15530-15343) | |
| 134-372, gnl|echTel1|scaffold_308769 (120445-120619) | |
| 134-372, gnl|fr1|chrUn (79813065-79812871) | |
| 134-372, gnl|galGal2|chr1 (47388952-47388770) | |
| 134-372, gnl|hg17|chr17 (73678480-73678662) | |
| 134-372, gnl|Hg17|chr17 (73678492-73678730) | |
| 134-372, gnl|loxAfr1|scaffold_49406 (6899-7092) | |
| 134-372, gnl|mm7|chr11 (117921495-117921673) | |
| 134-372, gnl|Mm7|chr11 (117921503-117921741) | |
| 134-372, gnl|monDom2|scaffold_18 (7058552-7058734) | |
| 134-372, gnl|oryCun1|scaffold_121515 (836-654) | |
| 134-372, gnl|panTro1|chr19 (77228913-77229095) | |
| 134-372, gnl|rheMac2|chr16 (73463922-73464104) | |
| 134-372, gnl|rn3|chr7 (118380034-118380216) | |
| 134-372, gnl|tetNig1|chr18 (2195661-2195849) | |
| 134-372, gnl|xenTro1|scaffold_293 (4133-4315) | |
| 514-736, gnl|bosTau2|chr19 (47869034-47868813) | |
| 514-736, gnl|Hg17|chr17 (73679416-73679637) | |
| 514-736, gnl|Mm7|chr11 (117922324-117922529) | |
| 922-1045, gnl|bosTau2|chr19 (47868718-47868604) | |
| 922-1045, gnl|hg17|chr16 (60984108-60984564) | |
| 922-1045, gnl|Hg17|chr17 (73679848-73680019) | |
| 922-1045, gnl|loxAfr1|scaffold_12748 (609-1110) | |
| 922-1045, gnl|panTro1|chr18 (55144433-55144917) | |
| 922-1045, gnl|rheMac2|chr20 (60697662-60698115) | |
| 1095-1417, gnl|bosTau2|chr19 (47868504-47868172) | |
| 1095-1417, gnl|canFam2|chr9 (5969758-5970062) | |
| 1095-1417, gnl|echTel1|scaffold_277153 (7645-7882) | |
| 1095-1417, gnl|Hg17|chr17 (73680086-73680397) | |
| 1095-1417, gnl|hg17|chr9 (77994213-77994488) | |
| 1095-1417, gnl|loxAfr1|scaffold_12748 (1173-916) | |
| 1095-1417, gnl|mm7|chr11 (117923325-117923066) | |
| 1095-1417, gnl|Mm7|chr11 (117923035-117923331) | |
| 1095-1417, gnl|oryCun1|scaffold_129959 (8100-8359) | |
| 1095-1417, gnl|panTro1|chr11 (61879673-61879947) | |
| 1095-1417, gnl|rheMac2|chr15 (86853911-86854186) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| lnt (0.426925) | |
| amn (0.417711) | |
| cag (0.302389) | |
| cga (0.279096) | |
| cov (0.264306) | |
| nms (0.213858) | |
| cty (0.20816) | |
| nep (0.183925) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| eru (0.120048) | |
| clu (0.119646) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.426925) | |
| amn (0.417711) | |
| cag (0.302389) | |
| cga (0.279096) | |
| cov (0.264306) | |
| nms (0.213858) | |
| cty (0.20816) | |
| nep (0.183925) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| eru (0.120048) | |
| clu (0.119646) |