Ss1.1-Pig1-100O23.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCTTCTGCCACTGTGAGAGGGCCAGCGGCCACCTGTGGAGCAGCCTCAACGTCAGTGG GGCTACCTGTGACCCCACCCTCAACCATGTGGTCCAGCTGCTGACCTGTGACCTGCTGCT GTCGCTGCGGACAGTGCTCTGGCAAAAGCAGGCAGGGGCCAGCCAGGCCCTGGGTGAGAC CTACCACGCATCAGGTGCTGAGCTGGCTGGCTTCCAGCGGGACCTGGGCAGCCTGCGCAG GCTGGCACATGGCTTCCGCCCTGCCTACCGCAAGGTGTTTCTGCACGAAGCCACCGTGCG CCTGATGGCAGGAGCCAGCCCCACCCGCACCCACCAGCTATTAGAGCACAGCCTGCGACG GCGCACAGCGCAGAGCGCCAAGCACGGAGAGGTGGACGCCTGGCCCGGCCAGCGAGAGCG GGCCACCGCCATCCTGCTGGCCTGCCGCCACCTTCCCCTCTCCTTCCTCTCCTCCCCGGG CCAGCGGGCAGTGCTGCTGGCCGAGGCCGCCCGCACCCTGGAGAAGGTGGGCGACCGGCG CTCATGCAACGACTGCCAGCAGATGATCGTCAAGCTGGGGGGTGGCACCGCCATCGCCGC CTCCTGACCACCGGGCTTTGCCCACCTCGGCCCATCACCTCCCTCTGTCTCTTAGTCTCT CTCTCTCCCTCCTCCTTCTGTCTCTCTCTCCCTCCTCCCTCTGTCCCTCAGGCTCTCTCC CTCCTCCCTCGGTCTCTCAGCCTCTCTCCGTCCTCCCTCTGGGAGCTGTAGGATGAGCCT TGTCTGCAGAGCTGTCACCTCCCGAGGCTCTGGGACCACCTCAGGCTAGTGGGCCCCTGG GCAGAGCCCTTGAAACTGCTGTGGATAGATGCCTGCAGACTGGGGCCAGTGGGCCTGGGC AAGGAAAGACAGGGTGGGGCAGCAGGGGGAGCTCCCAAGCCGCCCAGCCCCACCTCTGGG CCTCCCAGGACGTGCTTCCTCTGAACATCAACCCTCCCCTCCTTCCCTGTTTTTATCAGG CTTTCCCTCTGAGGGATGTAGGGCTCTGGCACCAGAGCACTTCGCCCTTGGCGCTGTGCC CAGCACGCCCCCCTTTTTATACGAATGTTTTTATACCAGTGTGCTTGGGGTTGCCGTGAT GCAGGGCTAAGCTGCTGTGGCATCCTGCTTCCCTCCCCGGCTCTGCATCCCCGCCCTCGT GCCTGACAAAGCCAGTTCCTTGTTTTCTCGTGATTGCACAGGACAGCCAGGGAGGGAGGC GGCCTGGCCCCGGGAGGTGGGTGGGAGGCAGGGGGCAGGCCTGGGCATGGATGAAATAAT GTCGGCATTATTTTTTAATTTTTTAAAAAATAAATGGTCTCTTATTTAATTGTCCTGTTC CTTCCCACTCCCCCGCCCCCTGGGATGTCAGCCTGAGCTGGGGGTAGGCCCCCGGGGGCT GGAGGGATTGGAGGGATGGAGCCGCCGCTGGGGCTGGGCCAGAGGGCCTTCGGTATGGCT TCTCAGCTCCCACCTCAACTCCTACCTCCATTGTCTATTTTTATCCCTAATTCTTGACCT GAAAATAAGCCAGGGTGGCAGGGACCAGACCCCAAGCCCTCCCTAGTGACAAGCCCCTTT TCGGGATGGGCACAGTGCTGCCCAAGATGGGCCCTAGGAATGAACTCCCCTGCCTTGGAG GGGGTCCTGGGTGGGAGAGTGGTCCCACTTTCTGGATCCCCTGGCTTGGTGCCTGCCTGG AGGCCATTTCTCCTGGGGCCTGAGGACTGCCTGGTCCCCCCAAGCCTGCTGGGAGGCTGC TTGGGCCAGAAAGTGGGCCGGGACCTCAGCACAGACCTGGGGGTTCTCACAGCAGGGGCT CCCTTGGTGCCAAGTGCAGGCGGGAACAGTTGCCTTGGACCTGGCCCCCTCTCCTCTCCT CTCCATCCCCCACCCACCAGGTGAGCCAGCCCCTGTGTCACGTGTACATACTGTGCCTTT TCTCGTTATTGTTTAGGGGTGGGGGGGTGGTTTTTTCACTGGAAAGGGGGATACGCCTAT GGCTTCCTTGATGTGGAATCATTCACTGTGTCCTGGATGTGGGTTATTCAATAAACACAG ATCGGTACCACCCAGTAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCTTCTGCCACTGTGAGAGGGCCAGCGGCCACCTGTGGAGCAGCCTCAACGTCAGTGG GGCTACCTGTGACCCCACCCTCAACCATGTGGTCCAGCTGCTGACCTGTGACCTGCTGCT GTCGCTGCGGACAGTGCTCTGGCAAAAGCAGGCAGGGGCCAGCCAGGCCCTGGGTGAGAC CTACCACGCATCAGGTGCTGAGCTGGCTGGCTTCCAGCGGGACCTGGGCAGCCTGCGCAG GCTGGCACATGGCTTCCGCCCTGCCTACCGCAAGGTGTTTCTGCACGAAGCCACCGTGCG CCTGATGGCAGGAGCCAGCCCCACCCGCACCCACCAGCTATTAGAGCACAGCCTGCGACG GCGCACAGCGCAGAGCGCCAAGCACGGAGAGGTGGACGCCTGGCCCGGCCAGCGAGAGCG GGCCACCGCCATCCTGCTGGCCTGCCGCCACCTTCCCCTCTCCTTCCTCTCCTCCCCGGG CCAGCGGGCAGTGCTGCTGGCCGAGGCCGCCCGCACCCTGGAGAAGGTGGGCGACCGGCG CTCATGCAACGACTGCCAGCAGATGATCGTCAAGCTGGGGGGTGGCACCGCCATCGCCGC CTCCTGACCACCGGGCTTTGCCCACCTCGGCCCATCACCTCCCTCTGTCTCTTAGTCTCT CTCTCTCCCTCCTCCTTCTGTCTCTCTCTCCCTCCTCCCTCTGTCCCTCAGGCTCTCTCC CTCCTCCCTCGGTCTCTCAGCCTCTCTCCGTCCTCCCTCTGGGAGCTGTAGGATGAGCCT TGTCTGCAGAGCTGTCACCTCCCGAGGCTCTGGGACCACCTCAGGCTAGTGGGCCCCTGG GCAGAGCCCTTGAAACTGCTGTGGATAGATGCCTGCAGACTGGGGCCAGTGGGCCTGGGC AAGGAAAGACAGGGTGGGGCAGCAGGGGGAGCTCCCAAGCCGCCCAGCCCCACCTCTGGG CCTCCCAGGACGTGCTTCCTCTGAACATCAACCCTCCCCTCCTTCCCTGTTTTTATCAGG CTTTCCCTCTGAGGGATGTAGGGCTCTGGCACCAGAGCACTTCGCCCTTGGCGCTGTGCC CAGCACGCCCCCCTTTTTATACGAATGTTTTTATACCAGTGTGCTTGGGGTTGCCGTGAT GCAGGGCTAAGCTGCTGTGGCATCCTGCTTCCCTCCCCGGCTCTGCATCCCCGCCCTCGT GCCTGACAAAGCCAGTTCCTTGTTTTCTCGTGATTGCACAGGACAGCCAGGGAGGGAGGC GGCCTGGCCCCGGGAGGTGGGTGGGAGGCAGGGGGCAGGCCTGGGCATGGATGAAATAAT GTCGGCATTATTTTTTAATTTTTTAAAAAATAAATGGTCTCTTATTTAATTGTCCTGTTC CTTCCCACTCCCCCGCCCCCTGGGATGTCAGCCTGAGCTGGGGGTAGGCCCCCGGGGGCT GGAGGGATTGGAGGGATGGAGCCGCCGCTGGGGCTGGGCCAGAGGGCCTTCGGTATGGCT TCTCAGCTCCCACCTCAACTCCTACCTCCATTGTCTATTTTTATCCCTAATTCTTGACCT GAAAATAAGCCAGGGTGGCAGGGACCAGACCCCAAGCCCTCCCTAGTGACAAGCCCCTTT TCGGGATGGGCACAGTGCTGCCCAAGATGGGCCCTAGGAATGAACTCCCCTGCCTTGGAG GGGGTCCTGGGTGGGAGAGTGGTCCCACTTTCTGGATCCCCTGGCTTGGTGCCTGCCTGG AGGCCATTTCTCCTGGGGCCTGAGGACTGCCTGGTCCCCCCAAGCCTGCTGGGAGGCTGC TTGGGCCAGAAAGTGGGCCGGGACCTCAGCACAGACCTGGGGGTTCTCACAGCAGGGGCT CCCTTGGTGCCAAGTGCAGGCGGGAACAGTTGCCTTGGACCTGGCCCCCTCTCCTCTCCT CTCCATCCCCCACCCACCAGGTGAGCCAGCCCCTGTGTCACGTGTACATACTGTGCCTTT TCTCGTTATTGTTTAGGGGTGGGGGGGTGGTTTTTTCACTGGAAAGGGGGATACGCCTAT GGCTTCCTTGATGTGGAATCATTCACTGTGTCCTGGATGTGGGTTATTCAATAAACACAG ATCGGTACCACCCAGTAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 157-276, - strand, RNAz p=0.842659 | |
| 922-1031, - strand, RNAz p=0.977631 | |
| 1261-1511, + strand, RNAz p=0.998766 | |
| 1587-1735, - strand, RNAz p=0.950089 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 157-276, - strand, RNAz p=0.842659 | |
| 922-1031, - strand, RNAz p=0.977631 | |
| 1261-1511, + strand, RNAz p=0.998766 | |
| 1587-1735, - strand, RNAz p=0.950089 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC056158, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 86-276, gnl|bosTau2|chr5 (70422809-70422999) | |
| 86-276, gnl|Hg17|chr22 (40623471-40623661) | |
| 86-276, gnl|Mm7|chr15 (82284027-82284217) | |
| 386-761, gnl|bosTau2|chr5 (70424858-70425225) | |
| 393-589, gnl|bosTau2|chr19 (24379165-24378969) | |
| 393-589, gnl|canFam2|chr5 (44685058-44684838) | |
| 393-589, gnl|danRer3|chrNA (18671016-18671233) | |
| 393-589, gnl|dasNov1|scaffold_222581 (250-35) | |
| 393-589, gnl|echTel1|scaffold_215968 (3986-3766) | |
| 393-589, gnl|fr1|chrUn (144151696-144151916) | |
| 393-589, gnl|galGal2|chr14 (6985506-6985741) | |
| 393-589, gnl|hg17|chr17 (17656660-17656880) | |
| 393-589, gnl|Hg17|chr17 (17656875-17656679) | |
| 393-589, gnl|loxAfr1|scaffold_45003 (1260-1040) | |
| 393-589, gnl|mm7|chr11 (60281479-60281699) | |
| 393-589, gnl|Mm7|chr11 (60281694-60281498) | |
| 393-589, gnl|monDom2|scaffold_55 (12929165-12928939) | |
| 393-589, gnl|oryCun1|scaffold_77201 (647-408) | |
| 393-589, gnl|panTro1|chr19 (18063822-18064042) | |
| 393-589, gnl|rheMac2|chr16 (17717118-17717338) | |
| 393-589, gnl|rn3|chr10 (46476189-46476409) | |
| 393-589, gnl|tetNig1|chr3 (8993180-8993399) | |
| 393-589, gnl|xenTro1|scaffold_142 (531673-531461) | |
| 922-2113, gnl|bosTau2|chr5 (70425614-70426847) | |
| 922-2113, gnl|Hg17|chr22 (40626421-40627808) | |
| 922-2113, gnl|Mm7|chr15 (82288611-82289772) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-276, gnl|bosTau2|chr5 (70422809-70422999) | |
| 86-276, gnl|Hg17|chr22 (40623471-40623661) | |
| 86-276, gnl|Mm7|chr15 (82284027-82284217) | |
| 386-761, gnl|bosTau2|chr5 (70424858-70425225) | |
| 393-589, gnl|bosTau2|chr19 (24379165-24378969) | |
| 393-589, gnl|canFam2|chr5 (44685058-44684838) | |
| 393-589, gnl|danRer3|chrNA (18671016-18671233) | |
| 393-589, gnl|dasNov1|scaffold_222581 (250-35) | |
| 393-589, gnl|echTel1|scaffold_215968 (3986-3766) | |
| 393-589, gnl|fr1|chrUn (144151696-144151916) | |
| 393-589, gnl|galGal2|chr14 (6985506-6985741) | |
| 393-589, gnl|hg17|chr17 (17656660-17656880) | |
| 393-589, gnl|Hg17|chr17 (17656875-17656679) | |
| 393-589, gnl|loxAfr1|scaffold_45003 (1260-1040) | |
| 393-589, gnl|mm7|chr11 (60281479-60281699) | |
| 393-589, gnl|Mm7|chr11 (60281694-60281498) | |
| 393-589, gnl|monDom2|scaffold_55 (12929165-12928939) | |
| 393-589, gnl|oryCun1|scaffold_77201 (647-408) | |
| 393-589, gnl|panTro1|chr19 (18063822-18064042) | |
| 393-589, gnl|rheMac2|chr16 (17717118-17717338) | |
| 393-589, gnl|rn3|chr10 (46476189-46476409) | |
| 393-589, gnl|tetNig1|chr3 (8993180-8993399) | |
| 393-589, gnl|xenTro1|scaffold_142 (531673-531461) | |
| 922-2113, gnl|bosTau2|chr5 (70425614-70426847) | |
| 922-2113, gnl|Hg17|chr22 (40626421-40627808) | |
| 922-2113, gnl|Mm7|chr15 (82288611-82289772) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| ece (0.45861) | |
| hyp (0.42851) | |
| nco (0.323468) | |
| ese (0.253004) | |
| med (0.232504) | |
| fli (0.202881) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| hyp (0.42851) | |
| nco (0.323468) | |
| ese (0.253004) | |
| med (0.232504) | |
| fli (0.202881) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |