Ss1.1-Pig1-101D23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCAAATAATGAATGGCCTTCTCTGTATTTCTGATTTCTTTATAATTTCCAATGAAGTTA GACTAGGAAAAGGAATTTTAATCAGAAAGAATTAGAATTTTAGCTATTTTAGACTGAAGG TTGGTTCTGTGAATCTGCTTGTCAGAAAGTTCAACTAAGTTTCAGGTTTTTTTAAAATAG GAAAAGTGGAAT------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------GCAGCCCAAGAA ATGGCAAAAAGACAAAAATAAATAAATAAATAAAATAGGAAAAGCTATATTGATTTAGAA TTATTTTCTTTTAATTCGCATTATAATAGTATCTTTAAGAAGGATTTTAAAATTATTTTG GCATATATATATATAGTTTCCATATATATATGTTTTGTTTTCATGTTCTACAAATACCAT ATTAAAATTTTAATGGAATTAATCTGTCCCATTAAAACTGACTATAAAAGGAATTTCTTT GAAACAAAATCCTACTTTGCCATTGATTCCATTTTAAAAGTTAAAGATTTCCATCTGAAA CTCCTCAAATAATCAGAGTCAGATTTGGGACAGTCTAAGTATTGAGTTTCTGACCAGTTC TTTGTATAGTGGATGAAATATACTAGCGTGTTAAGATATATTAGGGCTTTTTACTCAACC ACGTATTTCATTTCCATTGCATAGAACACCCTACCACCTATTATGTAGCCTTGGCTTATG CCTGCCTCCAACAGAATACCTAACTTTATTACTCAGTCCTTTTTATTAGGGAATTCATGA TATCTGTATGTACATATTCCATCCAAATATTTTAAAAGTTGAGATCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCAAATAATGAATGGCCTTCTCTGTATTTCTGATTTCTTTATAATTTCCAATGAAGTTA GACTAGGAAAAGGAATTTTAATCAGAAAGAATTAGAATTTTAGCTATTTTAGACTGAAGG TTGGTTCTGTGAATCTGCTTGTCAGAAAGTTCAACTAAGTTTCAGGTTTTTTTAAAATAG GAAAAGTGGAAT------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------GCAGCCCAAGAA ATGGCAAAAAGACAAAAATAAATAAATAAATAAAATAGGAAAAGCTATATTGATTTAGAA TTATTTTCTTTTAATTCGCATTATAATAGTATCTTTAAGAAGGATTTTAAAATTATTTTG GCATATATATATATAGTTTCCATATATATATGTTTTGTTTTCATGTTCTACAAATACCAT ATTAAAATTTTAATGGAATTAATCTGTCCCATTAAAACTGACTATAAAAGGAATTTCTTT GAAACAAAATCCTACTTTGCCATTGATTCCATTTTAAAAGTTAAAGATTTCCATCTGAAA CTCCTCAAATAATCAGAGTCAGATTTGGGACAGTCTAAGTATTGAGTTTCTGACCAGTTC TTTGTATAGTGGATGAAATATACTAGCGTGTTAAGATATATTAGGGCTTTTTACTCAACC ACGTATTTCATTTCCATTGCATAGAACACCCTACCACCTATTATGTAGCCTTGGCTTATG CCTGCCTCCAACAGAATACCTAACTTTATTACTCAGTCCTTTTTATTAGGGAATTCATGA TATCTGTATGTACATATTCCATCCAAATATTTTAAAAGTTGAGATCTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 632-747, - strand, RNAz p=0.999164 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 632-747, - strand, RNAz p=0.999164 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-183, gnl|bosTau2|chr5 (49380749-49380565) | |
| 1-183, gnl|canFam2|chr27 (21669300-21668407) | |
| 1-183, gnl|canFam2|chr27 (21667999-21669231) | |
| 1-183, gnl|dasNov1|scaffold_5192 (15110-14193) | |
| 1-183, gnl|dasNov1|scaffold_5192 (13762-15041) | |
| 1-183, gnl|hg17|chr12 (29383358-29384212) | |
| 1-183, gnl|Hg17|chr12 (29383752-29383551) | |
| 1-183, gnl|hg17|chr5 (83898478-83899694) | |
| 1-183, gnl|loxAfr1|scaffold_3585 (50954-50094) | |
| 1-183, gnl|loxAfr1|scaffold_3585 (49690-50890) | |
| 1-183, gnl|mm7|chr6 (148258340-148259079) | |
| 1-183, gnl|Mm7|chr6 (148258686-148258504) | |
| 1-183, gnl|monDom2|scaffold_71 (5982614-5981498) | |
| 1-183, gnl|oryCun1|scaffold_107510 (4846-5619) | |
| 1-183, gnl|oryCun1|scaffold_107510 (6032-4881) | |
| 1-183, gnl|panTro1|chr4 (31256212-31254997) | |
| 1-183, gnl|panTro1|chrUn_random (55821207-55822063) | |
| 1-183, gnl|rheMac2|chr11 (29668801-29669632) | |
| 1-183, gnl|rheMac2|chr6 (80785410-80786623) | |
| 1-183, gnl|rn3|chr4 (186041050-186041780) | |
| 238-791, gnl|bosTau2|chr5 (49380572-49380025) | |
| 238-791, gnl|Hg17|chr12 (29383558-29383015) | |
| 238-791, gnl|Mm7|chr6 (148258507-148258000) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-183, gnl|bosTau2|chr5 (49380749-49380565) | |
| 1-183, gnl|canFam2|chr27 (21669300-21668407) | |
| 1-183, gnl|canFam2|chr27 (21667999-21669231) | |
| 1-183, gnl|dasNov1|scaffold_5192 (15110-14193) | |
| 1-183, gnl|dasNov1|scaffold_5192 (13762-15041) | |
| 1-183, gnl|hg17|chr12 (29383358-29384212) | |
| 1-183, gnl|Hg17|chr12 (29383752-29383551) | |
| 1-183, gnl|hg17|chr5 (83898478-83899694) | |
| 1-183, gnl|loxAfr1|scaffold_3585 (50954-50094) | |
| 1-183, gnl|loxAfr1|scaffold_3585 (49690-50890) | |
| 1-183, gnl|mm7|chr6 (148258340-148259079) | |
| 1-183, gnl|Mm7|chr6 (148258686-148258504) | |
| 1-183, gnl|monDom2|scaffold_71 (5982614-5981498) | |
| 1-183, gnl|oryCun1|scaffold_107510 (4846-5619) | |
| 1-183, gnl|oryCun1|scaffold_107510 (6032-4881) | |
| 1-183, gnl|panTro1|chr4 (31256212-31254997) | |
| 1-183, gnl|panTro1|chrUn_random (55821207-55822063) | |
| 1-183, gnl|rheMac2|chr11 (29668801-29669632) | |
| 1-183, gnl|rheMac2|chr6 (80785410-80786623) | |
| 1-183, gnl|rn3|chr4 (186041050-186041780) | |
| 238-791, gnl|bosTau2|chr5 (49380572-49380025) | |
| 238-791, gnl|Hg17|chr12 (29383558-29383015) | |
| 238-791, gnl|Mm7|chr6 (148258507-148258000) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.230681) |