Non-Coding RNA Search

Ss1.1-Pig1-101F10.5

Sequence:


               
               TCCGATAAGTCTTCCTCTGACAGGTCAAGGCGTTCCTCATCTTCTCGTTCTTCCTCCAAC
CATAGCCGAGTTGAATCTTCTAAGCGCAAATCTACAAAGGAGAAAAAGTCCTCTTCCAAG
GATAGCCGGCCGTCTCAGGCTGCCGGGGATAACCAGGGAGATGAGGCCAAGGATCAGACG
TTCTCTGGAGGCACCTCTCAAGACACAAAAGCATCTGAGAGCTCAAAGCCGTGGCCAGAT
GCCACCACATACAGTGCTGGTTCTACATCACGGGCTTCAGCAGTGTCTGAGATGAGTCCC
CGAGAGCGAAGCCCTGCTCTCAAAAGCCCCCTCCAGTCTGTGGTGGTGAGGCGGCGGTCA
CCACGTCCTAGCCCGGTGCCAAAACCTAGCCCTCCACTTTCCAGCACATCCCAGATGGGC
TCAACTCTGCAGAGTGGTGCTGGGTACCAGGCTGGGACACACCAAGGTCAGTTTGACCAT
GGCTCTGGGTCCTTGAGTCCATCCAAAAAAAGCCCTGTGGGTAAGAGTCCACCAGCCACT
GGCTCCACATATGGCTCATCTCAGAAAGAGGAGGGTGCTGCTCCAGGAGGAGCAGCCTAT
ACAAAGAGGTATCTAGATGAGCAGAAGACAGAGAATGGAAAAGATAAGGAACAGAAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGATAAGTCTTCCTCTGACAGGTCAAGGCGTTCCTCATCTTCTCGTTCTTCCTCCAAC
CATAGCCGAGTTGAATCTTCTAAGCGCAAATCTACAAAGGAGAAAAAGTCCTCTTCCAAG
GATAGCCGGCCGTCTCAGGCTGCCGGGGATAACCAGGGAGATGAGGCCAAGGATCAGACG
TTCTCTGGAGGCACCTCTCAAGACACAAAAGCATCTGAGAGCTCAAAGCCGTGGCCAGAT
GCCACCACATACAGTGCTGGTTCTACATCACGGGCTTCAGCAGTGTCTGAGATGAGTCCC
CGAGAGCGAAGCCCTGCTCTCAAAAGCCCCCTCCAGTCTGTGGTGGTGAGGCGGCGGTCA
CCACGTCCTAGCCCGGTGCCAAAACCTAGCCCTCCACTTTCCAGCACATCCCAGATGGGC
TCAACTCTGCAGAGTGGTGCTGGGTACCAGGCTGGGACACACCAAGGTCAGTTTGACCAT
GGCTCTGGGTCCTTGAGTCCATCCAAAAAAAGCCCTGTGGGTAAGAGTCCACCAGCCACT
GGCTCCACATATGGCTCATCTCAGAAAGAGGAGGGTGCTGCTCCAGGAGGAGCAGCCTAT
ACAAAGAGGTATCTAGATGAGCAGAAGACAGAGAATGGAAAAGATAAGGAACAGAAACAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7Z5U1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7Z5U1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-279, - strand, RNAz p=0.986616
               

               
               360-609, - strand, RNAz p=0.98613

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-279, - strand, RNAz p=0.986616
               

               
               360-609, - strand, RNAz p=0.98613

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               365-458, + strand, RNAmicro p=0.998009
               

               
               306-445, - strand, RNAmicro p=0.99279

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               365-458, + strand, RNAmicro p=0.998009
               

               
               306-445, - strand, RNAmicro p=0.99279

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-609, gnl|bosTau2|chr3 (76634317-76633709)
               

               
               1-609, gnl|Hg17|chr1 (36421360-36421965)
               

               
               1-609, gnl|Mm7|chr4 (125625163-125624558)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-609, gnl|bosTau2|chr3 (76634317-76633709)
               

               
               1-609, gnl|Hg17|chr1 (36421360-36421965)
               

               
               1-609, gnl|Mm7|chr4 (125625163-125624558)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	120-279, - strand, RNAz p=0.986616
	360-609, - strand, RNAz p=0.98613

	365-458, + strand, RNAmicro p=0.998009
	306-445, - strand, RNAmicro p=0.99279

	1-609, gnl\|bosTau2\|chr3 (76634317-76633709)
	1-609, gnl\|Hg17\|chr1 (36421360-36421965)
	1-609, gnl\|Mm7\|chr4 (125625163-125624558)