Non-Coding RNA Search

Ss1.1-Pig1-101F21.5

Sequence:


               
               GCCGCCGGGCAGGCCTGGGCGGTGCCGGGGACATGACGCTCTCCATGACCGGCCGAGAGC
GGTCGGAGTACCTGCGCTGGAAGCAGGAGCGGGAGAAGATTGACCAGGAGCGGCTGCAGA
GGCACCGCAAGCCCACTGGCCAGTGGCGGCGGGAGTGGGACGCTGAGAAGACCGATGGCA
TGTGAGTCCCTGGCCCGCTTGTCCTTGTGTGGCTCCTCCTCCTTGGCCTGACCTCTGACT
CCTTTGTGGCGCTCTGGTTTCTCGTCCTGTGTGTGGGTGAGCAGTCACTGTGTAGCTGTG
TAACCACCACCAAACCTAAGTGGCACAGAAAGGCAGTTCTTTATCACGTGTTCCCTCCTG
GGTCACCCAGGCTGGATTTGAAGGTATGGGTCCAGCTGGGCGTGGCCTCTTGCTGCAGGT
GAGCCTGGGGAAAGGGGTGTGTGTGCTCATTCTGGGGTTCATGCTGAATGGAGCAGGTCC
CCTGGGACGCGTTGGCCGTGGCGTGGGCGGACGTGAAGGAGGGAGCGTGGACATGCCCGC
CCATCCTCTTGGCCCCCAGAGCCTGCCTGCGCAGGAGCTTAAACCCTGCACACGCTCAGG
GGTGGGGCTGCGGTGGCTACTCGGCCAAGGGTGCGGCTGTACATTCTTGTTGTAGGCAAA
GCAAAAAGAAAGCGTCACTCACAGTGATGACCCCCTGCACCCTCCCTTCATCCCTCTAAC
GTGGCCCCCACCAACCCAAACCCATTGTCCTAGTGGCACTGTTATTCTCAGCGCTGACTG
TGTGCCCTTTTGGGTCCCAGAAAACATCCTGTTAGTCACACTGGAAGTGAAGGTGTCATC
AACAGGATGAATCTCCATAGCAAAGATGGAGAAGGTTCTGGAAGAGCTACCAACCAGCAG
TCTCAAGATTGGCAGCTATAGTTTTTACATGGTCCTCTGTCCTCTGCTGTGGCAGCAGTT
TTCATGCCCAAAACTTCTTGTTGGCACTTGCTAAAGAAAGAGGATCTTGTCTGTGTGCCT
GGTCGTTGGAGCGTTTATTTTCGGATTGTGAGCTAGGCCTGTGCCAGCATGAGAAGCATT
TTGCACAGATACCGTAGCTCGTTTTTCTTAAGGTGTGGGCAGCTGGGCTTTGGGGGAGAT
GTCTTCAGGCTTAAGAATGAGAAAATAGGAGTTCCTGTTGTGGCTCAGCAGCAACGACTC
TGACTAGGAACCATGAGTTTGCGAGTTCAGTCCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCGGGCAGGCCTGGGCGGTGCCGGGGACATGACGCTCTCCATGACCGGCCGAGAGC
GGTCGGAGTACCTGCGCTGGAAGCAGGAGCGGGAGAAGATTGACCAGGAGCGGCTGCAGA
GGCACCGCAAGCCCACTGGCCAGTGGCGGCGGGAGTGGGACGCTGAGAAGACCGATGGCA
TGTGAGTCCCTGGCCCGCTTGTCCTTGTGTGGCTCCTCCTCCTTGGCCTGACCTCTGACT
CCTTTGTGGCGCTCTGGTTTCTCGTCCTGTGTGTGGGTGAGCAGTCACTGTGTAGCTGTG
TAACCACCACCAAACCTAAGTGGCACAGAAAGGCAGTTCTTTATCACGTGTTCCCTCCTG
GGTCACCCAGGCTGGATTTGAAGGTATGGGTCCAGCTGGGCGTGGCCTCTTGCTGCAGGT
GAGCCTGGGGAAAGGGGTGTGTGTGCTCATTCTGGGGTTCATGCTGAATGGAGCAGGTCC
CCTGGGACGCGTTGGCCGTGGCGTGGGCGGACGTGAAGGAGGGAGCGTGGACATGCCCGC
CCATCCTCTTGGCCCCCAGAGCCTGCCTGCGCAGGAGCTTAAACCCTGCACACGCTCAGG
GGTGGGGCTGCGGTGGCTACTCGGCCAAGGGTGCGGCTGTACATTCTTGTTGTAGGCAAA
GCAAAAAGAAAGCGTCACTCACAGTGATGACCCCCTGCACCCTCCCTTCATCCCTCTAAC
GTGGCCCCCACCAACCCAAACCCATTGTCCTAGTGGCACTGTTATTCTCAGCGCTGACTG
TGTGCCCTTTTGGGTCCCAGAAAACATCCTGTTAGTCACACTGGAAGTGAAGGTGTCATC
AACAGGATGAATCTCCATAGCAAAGATGGAGAAGGTTCTGGAAGAGCTACCAACCAGCAG
TCTCAAGATTGGCAGCTATAGTTTTTACATGGTCCTCTGTCCTCTGCTGTGGCAGCAGTT
TTCATGCCCAAAACTTCTTGTTGGCACTTGCTAAAGAAAGAGGATCTTGTCTGTGTGCCT
GGTCGTTGGAGCGTTTATTTTCGGATTGTGAGCTAGGCCTGTGCCAGCATGAGAAGCATT
TTGCACAGATACCGTAGCTCGTTTTTCTTAAGGTGTGGGCAGCTGGGCTTTGGGGGAGAT
GTCTTCAGGCTTAAGAATGAGAAAATAGGAGTTCCTGTTGTGGCTCAGCAGCAACGACTC
TGACTAGGAACCATGAGTTTGCGAGTTCAGTCCTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               80-199, + strand, RNAz p=0.616137
               

               
               1045-1164, + strand, RNAz p=0.882109

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, + strand, RNAz p=0.616137
               

               
               1045-1164, + strand, RNAz p=0.882109

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-345, gnl|bosTau2|chr18 (47259827-47260173)
               

               
               1-345, gnl|Hg17|chr19 (52461709-52462077)
               


               
               442-947, gnl|bosTau2|chr18 (47260605-47261099)
               

               
               442-947, gnl|Hg17|chr19 (52462632-52463450)
               


               
               997-1164, gnl|bosTau2|chr18 (47261113-47261278)
               

               
               997-1164, gnl|canFam2|chr1 (111596470-111596312)
               

               
               997-1164, gnl|dasNov1|scaffold_105618 (3141-2986)
               

               
               997-1164, gnl|hg17|chr19 (52463455-52463613)
               

               
               997-1164, gnl|Hg17|chr19 (52463499-52463667)
               

               
               997-1164, gnl|loxAfr1|scaffold_52217 (5388-5203)
               

               
               997-1164, gnl|panTro1|chr20 (49770874-49771032)
               

               
               997-1164, gnl|rheMac2|chr19 (53596820-53596977)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-345, gnl|bosTau2|chr18 (47259827-47260173)
               

               
               1-345, gnl|Hg17|chr19 (52461709-52462077)
               


               
               442-947, gnl|bosTau2|chr18 (47260605-47261099)
               

               
               442-947, gnl|Hg17|chr19 (52462632-52463450)
               


               
               997-1164, gnl|bosTau2|chr18 (47261113-47261278)
               

               
               997-1164, gnl|canFam2|chr1 (111596470-111596312)
               

               
               997-1164, gnl|dasNov1|scaffold_105618 (3141-2986)
               

               
               997-1164, gnl|hg17|chr19 (52463455-52463613)
               

               
               997-1164, gnl|Hg17|chr19 (52463499-52463667)
               

               
               997-1164, gnl|loxAfr1|scaffold_52217 (5388-5203)
               

               
               997-1164, gnl|panTro1|chr20 (49770874-49771032)
               

               
               997-1164, gnl|rheMac2|chr19 (53596820-53596977)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               pgl (0.118483)

	80-199, + strand, RNAz p=0.616137
	1045-1164, + strand, RNAz p=0.882109

	1-345, gnl\|bosTau2\|chr18 (47259827-47260173)
	1-345, gnl\|Hg17\|chr19 (52461709-52462077)

	442-947, gnl\|bosTau2\|chr18 (47260605-47261099)
	442-947, gnl\|Hg17\|chr19 (52462632-52463450)

	997-1164, gnl\|bosTau2\|chr18 (47261113-47261278)
	997-1164, gnl\|canFam2\|chr1 (111596470-111596312)
	997-1164, gnl\|dasNov1\|scaffold_105618 (3141-2986)
	997-1164, gnl\|hg17\|chr19 (52463455-52463613)
	997-1164, gnl\|Hg17\|chr19 (52463499-52463667)
	997-1164, gnl\|loxAfr1\|scaffold_52217 (5388-5203)
	997-1164, gnl\|panTro1\|chr20 (49770874-49771032)
	997-1164, gnl\|rheMac2\|chr19 (53596820-53596977)