Non-Coding RNA Search

Ss1.1-Pig1-101L03.5.5

Sequence:


               
               GAGGCGCTCTTCCTGGTACATGGACGCCAGTGATTTCCTGCCCACGGAGGACCCCCAGAG
CTCCCAGCCCTCTGCACAGGGCTGGCCGGTGGTGCTGGGAGACGCCCAGGCTCTGAAGCC
CCTCAGCTTCTCCAATGACAAGCCCCCCGGAGCCGCGGGTTTGAGCCAACTTGCCGAGGC
CGTGGCCAACCGCACAGGCGAGGGCCCAGAGGACTCGGCTGCCCACGGCCGCCATGCGGG
CCTCCCCGCTGCTGGCCCTGGCGGGGACAGAGACGAAGATGAGGAGAACACAGCCCCAGA
CTCCGCCCTGGACACCTCCCTGGACCAGTCCTTCTCTGAGGACGCAGTGACCGACTCGTC
CGGGTCTGGCACCCTCCCCAGGGCCCAGGGCCGGACCTCAAAGGGAACAGGCAAGCGGAG
GAAGAAGCGCCCCTCCAGGAACCAGGAAGAGGTTGCCCCTGACCCTGACGATAATAAAAC
AAAAAGACTCTGTGTGATCCAGTGAGGCCCCAGGCCCAGGCCCAGAGCCAAGTGAGAGGA
CCCACGGCCGGGCTGCTGGACGCACCACCGCGCAGAGCTCCTCCCGGCCGGGCTGGCGCC
AGGTCTCCGGGAAACCACACTCCGTGCCTTACGCGGCCCGCGCCGCAGCCTCCCGGAGCC
TTTGGGGTGTTGGCGGCGGGGACCCCAACCGGCACCGGGACACGTGCCCGCGCGGCGCCC
TCCAGGCCTGCCTGCACGCCCCCAGCCCCCTGCAGTCTGCTTTCTGAATGTCACGGCCCG
ACCCCCTACCCCACACCGCATGCACCTTGGCGCCCGCCTGCAGGGGACTGGGTCAGGGGG
CTGTGTCCCCAGGGCACCACCAAGCTTGCGCCCTCTTCTTCAGTGACCTGATGCCCCGAT
TCTTCTGGGGACAGGCCCTCGCAGACCCCTCCCCGAAAGCCACAGGAGCCAGGCAGGGCA
AGGGCCCCTGCTCCACAGCTCTGCCTCCCAGCCCGCTCGGCTGAGCTGAAGCAGTCGTTT
CTCATAAACTATGATGTGTCTCTACTGTCCTTTGGTGGCAGAGTGGGGAATGGGGCGTGG
GTGAGGGCCCCAAACAGAAGCAGGCTGGCCTGGGTGCCTCTGCTCGGCAGAGGGGGCAGA
CCCCATCCCTGGGGGTGGGGAGAGGTCTGCCCTCGGCCGTAGCCAGGCCTGCGGCCCCCA
CTCAACTACAGGCAGACAAGGATCCAGGCCTCGGGGACAGGAAGGGTCTGGCCAGGGGTG
CCACCGCCTCTCTCCACTGCCCCCTGCGCTGGCCCCCAGATGTGCGCCATCGAGACTGGA
GGGGCTTTGGCCAATAAAGAGCAGCCCTGGCCCAGCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCGCTCTTCCTGGTACATGGACGCCAGTGATTTCCTGCCCACGGAGGACCCCCAGAG
CTCCCAGCCCTCTGCACAGGGCTGGCCGGTGGTGCTGGGAGACGCCCAGGCTCTGAAGCC
CCTCAGCTTCTCCAATGACAAGCCCCCCGGAGCCGCGGGTTTGAGCCAACTTGCCGAGGC
CGTGGCCAACCGCACAGGCGAGGGCCCAGAGGACTCGGCTGCCCACGGCCGCCATGCGGG
CCTCCCCGCTGCTGGCCCTGGCGGGGACAGAGACGAAGATGAGGAGAACACAGCCCCAGA
CTCCGCCCTGGACACCTCCCTGGACCAGTCCTTCTCTGAGGACGCAGTGACCGACTCGTC
CGGGTCTGGCACCCTCCCCAGGGCCCAGGGCCGGACCTCAAAGGGAACAGGCAAGCGGAG
GAAGAAGCGCCCCTCCAGGAACCAGGAAGAGGTTGCCCCTGACCCTGACGATAATAAAAC
AAAAAGACTCTGTGTGATCCAGTGAGGCCCCAGGCCCAGGCCCAGAGCCAAGTGAGAGGA
CCCACGGCCGGGCTGCTGGACGCACCACCGCGCAGAGCTCCTCCCGGCCGGGCTGGCGCC
AGGTCTCCGGGAAACCACACTCCGTGCCTTACGCGGCCCGCGCCGCAGCCTCCCGGAGCC
TTTGGGGTGTTGGCGGCGGGGACCCCAACCGGCACCGGGACACGTGCCCGCGCGGCGCCC
TCCAGGCCTGCCTGCACGCCCCCAGCCCCCTGCAGTCTGCTTTCTGAATGTCACGGCCCG
ACCCCCTACCCCACACCGCATGCACCTTGGCGCCCGCCTGCAGGGGACTGGGTCAGGGGG
CTGTGTCCCCAGGGCACCACCAAGCTTGCGCCCTCTTCTTCAGTGACCTGATGCCCCGAT
TCTTCTGGGGACAGGCCCTCGCAGACCCCTCCCCGAAAGCCACAGGAGCCAGGCAGGGCA
AGGGCCCCTGCTCCACAGCTCTGCCTCCCAGCCCGCTCGGCTGAGCTGAAGCAGTCGTTT
CTCATAAACTATGATGTGTCTCTACTGTCCTTTGGTGGCAGAGTGGGGAATGGGGCGTGG
GTGAGGGCCCCAAACAGAAGCAGGCTGGCCTGGGTGCCTCTGCTCGGCAGAGGGGGCAGA
CCCCATCCCTGGGGGTGGGGAGAGGTCTGCCCTCGGCCGTAGCCAGGCCTGCGGCCCCCA
CTCAACTACAGGCAGACAAGGATCCAGGCCTCGGGGACAGGAAGGGTCTGGCCAGGGGTG
CCACCGCCTCTCTCCACTGCCCCCTGCGCTGGCCCCCAGATGTGCGCCATCGAGACTGGA
GGGGCTTTGGCCAATAAAGAGCAGCCCTGGCCCAGCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q69YL8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q69YL8_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               290-409, - strand, RNAz p=0.93827
               

               
               842-1040, - strand, RNAz p=0.988749
               

               
               874-1087, - strand, RNAz p=0.960568

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               290-409, - strand, RNAz p=0.93827
               

               
               842-1040, - strand, RNAz p=0.988749
               

               
               874-1087, - strand, RNAz p=0.960568

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-449, gnl|bosTau2|chr21 (48993747-48993278)
               

               
               1-449, gnl|Hg17|chr14 (104251763-104252238)
               

               
               1-449, gnl|Mm7|chr12 (110136509-110136981)
               


               
               714-1087, gnl|bosTau2|chr21 (48990102-48989738)
               

               
               714-1087, gnl|canFam2|chr8 (75329302-75329756)
               

               
               714-1087, gnl|hg17|chr14 (104256377-104256644)
               

               
               714-1087, gnl|mm7|chr12 (110140028-110140295)
               

               
               714-1087, gnl|monDom2|scaffold_308 (76031-76260)
               

               
               714-1087, gnl|panTro1|chr15 (104942387-104942654)
               

               
               714-1087, gnl|rheMac2|chr7 (168102698-168102964)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-449, gnl|bosTau2|chr21 (48993747-48993278)
               

               
               1-449, gnl|Hg17|chr14 (104251763-104252238)
               

               
               1-449, gnl|Mm7|chr12 (110136509-110136981)
               


               
               714-1087, gnl|bosTau2|chr21 (48990102-48989738)
               

               
               714-1087, gnl|canFam2|chr8 (75329302-75329756)
               

               
               714-1087, gnl|hg17|chr14 (104256377-104256644)
               

               
               714-1087, gnl|mm7|chr12 (110140028-110140295)
               

               
               714-1087, gnl|monDom2|scaffold_308 (76031-76260)
               

               
               714-1087, gnl|panTro1|chr15 (104942387-104942654)
               

               
               714-1087, gnl|rheMac2|chr7 (168102698-168102964)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pla (0.401016)
               

               
               nlu (0.383362)
               

               
               col (0.195008)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               nlu (0.383362)
               

               
               col (0.195008)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	290-409, - strand, RNAz p=0.93827
	842-1040, - strand, RNAz p=0.988749
	874-1087, - strand, RNAz p=0.960568

	1-449, gnl\|bosTau2\|chr21 (48993747-48993278)
	1-449, gnl\|Hg17\|chr14 (104251763-104252238)
	1-449, gnl\|Mm7\|chr12 (110136509-110136981)

	714-1087, gnl\|bosTau2\|chr21 (48990102-48989738)
	714-1087, gnl\|canFam2\|chr8 (75329302-75329756)
	714-1087, gnl\|hg17\|chr14 (104256377-104256644)
	714-1087, gnl\|mm7\|chr12 (110140028-110140295)
	714-1087, gnl\|monDom2\|scaffold_308 (76031-76260)
	714-1087, gnl\|panTro1\|chr15 (104942387-104942654)
	714-1087, gnl\|rheMac2\|chr7 (168102698-168102964)

	pla (0.401016)
	nlu (0.383362)
	col (0.195008)
	nje (0.16592)
	nca (0.136874)
	cly (0.120642)
	jca (0.11396)