Ss1.1-Pig1-101M20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGCTGACACCTTCGCGCTATGGGACGTCGCGACCTGTGACGTCTGGAGGGCGCCTCAAG TCTTCACCCAGGCTGAAGTCCCGGAAAGGCAGCATCGGGGGCTGGATTCTGAGCGCTTTC TTCCTGCTCCGAGTGCAGAACTGAATCCAGCCTGGGTCCTGGACCCGTGTAGTCCTGACC CTGTTCCCTCCTCACTGCATTGTCGCTCCTCGCGCCACCGGCTGGGCCCCGGAATGCCGG GGGTTTCCGCCCGGGGCCTCTCTTACGAGGAGAGGAGGCAACTAGCTGTGAACCTCACCC GGGTCGTGACGCTCTACCGTTCCATCCTGGACGCCTACATCATTGAATTCTTCACAGACA ACCTGTGGGGCACACTCCCTTGTGCGTGGCAGGAAGCTTTGGACGGACTGAACCCACCAC AGCTGGCCACACTGCTGCTGGGGATGCCTGGGGAAGGGGAAGTGGTCAGGTACAGGTCGG TGTGGCCACTCACCCTGCTGGCCCTGAAGTCCACAGCCTATGCCCTGGCCTTTACGCGGA CACCTGGGTTTCAGACCCCCTCAGAGTTCCTGGAGAACCCCAGCCAGAGTTCCCGACTGA CAGCTCCATTCCGGAAACACGTCAGGCCCAAGAAGCAGCATGAGATCCGGAGGCTGGGAG AGTTGGTGAAGAAGCTGAGCGACCTCACAGGCTGCACCCAGGTTGTGGATGTAGGCTCAG GCCAGGGCCATCTCTCCCGCTTCATGTCCCTGGGGCTGGGGCTGATGGTGAAGAGCATTG AAGGGGATCCGAGACTGGTGGAGAGAGCCCAGCGCCTAGACCAGGAGCTCCTGCAGACTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGCTGACACCTTCGCGCTATGGGACGTCGCGACCTGTGACGTCTGGAGGGCGCCTCAAG TCTTCACCCAGGCTGAAGTCCCGGAAAGGCAGCATCGGGGGCTGGATTCTGAGCGCTTTC TTCCTGCTCCGAGTGCAGAACTGAATCCAGCCTGGGTCCTGGACCCGTGTAGTCCTGACC CTGTTCCCTCCTCACTGCATTGTCGCTCCTCGCGCCACCGGCTGGGCCCCGGAATGCCGG GGGTTTCCGCCCGGGGCCTCTCTTACGAGGAGAGGAGGCAACTAGCTGTGAACCTCACCC GGGTCGTGACGCTCTACCGTTCCATCCTGGACGCCTACATCATTGAATTCTTCACAGACA ACCTGTGGGGCACACTCCCTTGTGCGTGGCAGGAAGCTTTGGACGGACTGAACCCACCAC AGCTGGCCACACTGCTGCTGGGGATGCCTGGGGAAGGGGAAGTGGTCAGGTACAGGTCGG TGTGGCCACTCACCCTGCTGGCCCTGAAGTCCACAGCCTATGCCCTGGCCTTTACGCGGA CACCTGGGTTTCAGACCCCCTCAGAGTTCCTGGAGAACCCCAGCCAGAGTTCCCGACTGA CAGCTCCATTCCGGAAACACGTCAGGCCCAAGAAGCAGCATGAGATCCGGAGGCTGGGAG AGTTGGTGAAGAAGCTGAGCGACCTCACAGGCTGCACCCAGGTTGTGGATGTAGGCTCAG GCCAGGGCCATCTCTCCCGCTTCATGTCCCTGGGGCTGGGGCTGATGGTGAAGAGCATTG AAGGGGATCCGAGACTGGTGGAGAGAGCCCAGCGCCTAGACCAGGAGCTCCTGCAGACTC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 545-664, - strand, RNAz p=0.57662 | |
| 565-665, - strand, RNAz p=0.686575 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 545-664, - strand, RNAz p=0.57662 | |
| 565-665, - strand, RNAz p=0.686575 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 561-634, - strand, RNAmicro p=0.967764 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-343, gnl|bosTau2|chr3 (11069938-11070278) | |
| 1-343, gnl|Hg17|chr1 (153511738-153512079) | |
| 1-343, gnl|Mm7|chr3 (88043996-88043658) | |
| 466-665, gnl|bosTau2|chr3 (11073090-11073289) | |
| 466-665, gnl|canFam2|chr7 (44224114-44223882) | |
| 466-665, gnl|danRer3|chr16 (29721418-29721197) | |
| 466-665, gnl|dasNov1|scaffold_36218 (3773-3534) | |
| 466-665, gnl|echTel1|scaffold_230021 (6944-7194) | |
| 466-665, gnl|fr1|chrUn (138028128-138028369) | |
| 466-665, gnl|hg17|chr1 (153515109-153515348) | |
| 466-665, gnl|Hg17|chr1 (153515142-153515341) | |
| 466-665, gnl|loxAfr1|scaffold_17986 (32442-32678) | |
| 466-665, gnl|mm7|chr3 (88041595-88041356) | |
| 466-665, gnl|Mm7|chr3 (88041560-88041361) | |
| 466-665, gnl|monDom2|scaffold_59 (621802-621568) | |
| 466-665, gnl|oryCun1|scaffold_178525 (47857-48095) | |
| 466-665, gnl|panTro1|chr1 (135478289-135478528) | |
| 466-665, gnl|rheMac2|chr1 (135341042-135341281) | |
| 466-665, gnl|rn3|chr2 (179955221-179954982) | |
| 466-665, gnl|tetNig1|chrUn_random (41262996-41262762) | |
| 466-665, gnl|xenTro1|scaffold_956 (401633-401899) | |
| 722-840, gnl|bosTau2|chr3 (11074065-11074183) | |
| 722-840, gnl|canFam2|chr7 (44223203-44223064) | |
| 722-840, gnl|fr1|chrUn (138028628-138028767) | |
| 722-840, gnl|hg17|chr1 (153516240-153516379) | |
| 722-840, gnl|Hg17|chr1 (153516238-153516356) | |
| 722-840, gnl|loxAfr1|scaffold_17986 (33481-33620) | |
| 722-840, gnl|mm7|chr3 (88040679-88040540) | |
| 722-840, gnl|Mm7|chr3 (88040679-88040561) | |
| 722-840, gnl|monDom2|scaffold_59 (620573-620434) | |
| 722-840, gnl|oryCun1|scaffold_178525 (48962-49101) | |
| 722-840, gnl|panTro1|chr1 (135480273-135480412) | |
| 722-840, gnl|rheMac2|chr1 (135342188-135342327) | |
| 722-840, gnl|rn3|chr2 (179954264-179954125) | |
| 722-840, gnl|xenTro1|scaffold_956 (403434-403563) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-343, gnl|bosTau2|chr3 (11069938-11070278) | |
| 1-343, gnl|Hg17|chr1 (153511738-153512079) | |
| 1-343, gnl|Mm7|chr3 (88043996-88043658) | |
| 466-665, gnl|bosTau2|chr3 (11073090-11073289) | |
| 466-665, gnl|canFam2|chr7 (44224114-44223882) | |
| 466-665, gnl|danRer3|chr16 (29721418-29721197) | |
| 466-665, gnl|dasNov1|scaffold_36218 (3773-3534) | |
| 466-665, gnl|echTel1|scaffold_230021 (6944-7194) | |
| 466-665, gnl|fr1|chrUn (138028128-138028369) | |
| 466-665, gnl|hg17|chr1 (153515109-153515348) | |
| 466-665, gnl|Hg17|chr1 (153515142-153515341) | |
| 466-665, gnl|loxAfr1|scaffold_17986 (32442-32678) | |
| 466-665, gnl|mm7|chr3 (88041595-88041356) | |
| 466-665, gnl|Mm7|chr3 (88041560-88041361) | |
| 466-665, gnl|monDom2|scaffold_59 (621802-621568) | |
| 466-665, gnl|oryCun1|scaffold_178525 (47857-48095) | |
| 466-665, gnl|panTro1|chr1 (135478289-135478528) | |
| 466-665, gnl|rheMac2|chr1 (135341042-135341281) | |
| 466-665, gnl|rn3|chr2 (179955221-179954982) | |
| 466-665, gnl|tetNig1|chrUn_random (41262996-41262762) | |
| 466-665, gnl|xenTro1|scaffold_956 (401633-401899) | |
| 722-840, gnl|bosTau2|chr3 (11074065-11074183) | |
| 722-840, gnl|canFam2|chr7 (44223203-44223064) | |
| 722-840, gnl|fr1|chrUn (138028628-138028767) | |
| 722-840, gnl|hg17|chr1 (153516240-153516379) | |
| 722-840, gnl|Hg17|chr1 (153516238-153516356) | |
| 722-840, gnl|loxAfr1|scaffold_17986 (33481-33620) | |
| 722-840, gnl|mm7|chr3 (88040679-88040540) | |
| 722-840, gnl|Mm7|chr3 (88040679-88040561) | |
| 722-840, gnl|monDom2|scaffold_59 (620573-620434) | |
| 722-840, gnl|oryCun1|scaffold_178525 (48962-49101) | |
| 722-840, gnl|panTro1|chr1 (135480273-135480412) | |
| 722-840, gnl|rheMac2|chr1 (135342188-135342327) | |
| 722-840, gnl|rn3|chr2 (179954264-179954125) | |
| 722-840, gnl|xenTro1|scaffold_956 (403434-403563) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |