Ss1.1-Pig1-106C13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCGCCTTTCCCAGCAGCCAGCAGGAGGCCCAGAACCGAATGAACCGGACCCAGAACCT GATCAAGACGCTGGTGTCTGGCATCACGCCGGCCACCCGCAGCCGGGCTGCCCCTCAGGC CCTCGTCTTGGACACCCTTTGTCTGCTCCTGGACATCCTCGCGCCCAAGCTGCGCCCCGT GAGCACGCAGCTGTACAGCACCCGGGAGAAGCAGCAGCTGGCCAGCCTTGTGGGCACCAT GCTCGCCTACAGCCTGACCTACCGCCAGGAGCGCACGCCCGACGGGCAGTACGTCTACAG GCTGGAGCCGAATGTGGAGGAGGTCTGCCGCTTTCCTGAGCTGCCTGCCCGCAAGCCCCT CACCTACCAGGCCAAGCAGCTCATCGCCCGCGAGATTGAAGTGGAGAAGATGCGACGGGT GGAGGCCTTGGCCCGGGCCAGGGACGGCCCCCAGGTGGATGGGGGTCCCCTGGGGGGCAC TGGAGGGACAGGGGTGCAACCACCAGCCCCCTGCAGCCACAAGCAGCGGCTGGAGTGTGT CCTGAAGGGAGCCGCGCTGGAGGAACAGCTGGAGCGGGACTTCTTTGGCCGTGTGGTCGT CAGGAGAGCAGCAGCCGTGAGCTCAGAGGACACAGCCCCTGAGCCTGACTCGGCCGAGCG GTGCATGGGCACCGCCGTGGGCAGGAGTGACGTCTGGTTCCGCTTCAAGGAGGGTGTCTC TAACGCTGTGCGGCGTGGCGTGTACATCAGAGACCTGCTCTAGCCGGGGCTGCCCCGAGC CGGGGTCTGCTGGGCACCCCGGGCTGCGCTGGCCTCTCCGACCCCCACCGGACACCCAGG ATCCATGCCGGCCGCCCCGATCCACGCCAGACGTCCCCACGCCCACACTGGACGCCTGGT GTGCCCTCTGCTAGAAAGTGGACACGAGCACGTTCTTCCTCGGAAAGTCTTTATAAAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCGCCTTTCCCAGCAGCCAGCAGGAGGCCCAGAACCGAATGAACCGGACCCAGAACCT GATCAAGACGCTGGTGTCTGGCATCACGCCGGCCACCCGCAGCCGGGCTGCCCCTCAGGC CCTCGTCTTGGACACCCTTTGTCTGCTCCTGGACATCCTCGCGCCCAAGCTGCGCCCCGT GAGCACGCAGCTGTACAGCACCCGGGAGAAGCAGCAGCTGGCCAGCCTTGTGGGCACCAT GCTCGCCTACAGCCTGACCTACCGCCAGGAGCGCACGCCCGACGGGCAGTACGTCTACAG GCTGGAGCCGAATGTGGAGGAGGTCTGCCGCTTTCCTGAGCTGCCTGCCCGCAAGCCCCT CACCTACCAGGCCAAGCAGCTCATCGCCCGCGAGATTGAAGTGGAGAAGATGCGACGGGT GGAGGCCTTGGCCCGGGCCAGGGACGGCCCCCAGGTGGATGGGGGTCCCCTGGGGGGCAC TGGAGGGACAGGGGTGCAACCACCAGCCCCCTGCAGCCACAAGCAGCGGCTGGAGTGTGT CCTGAAGGGAGCCGCGCTGGAGGAACAGCTGGAGCGGGACTTCTTTGGCCGTGTGGTCGT CAGGAGAGCAGCAGCCGTGAGCTCAGAGGACACAGCCCCTGAGCCTGACTCGGCCGAGCG GTGCATGGGCACCGCCGTGGGCAGGAGTGACGTCTGGTTCCGCTTCAAGGAGGGTGTCTC TAACGCTGTGCGGCGTGGCGTGTACATCAGAGACCTGCTCTAGCCGGGGCTGCCCCGAGC CGGGGTCTGCTGGGCACCCCGGGCTGCGCTGGCCTCTCCGACCCCCACCGGACACCCAGG ATCCATGCCGGCCGCCCCGATCCACGCCAGACGTCCCCACGCCCACACTGGACGCCTGGT GTGCCCTCTGCTAGAAAGTGGACACGAGCACGTTCTTCCTCGGAAAGTCTTTATAAAAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 46-183, - strand, RNAz p=0.575863 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 46-183, - strand, RNAz p=0.575863 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 27-183, gnl|bosTau2|chr25 (1127084-1126928) | |
| 27-183, gnl|canFam2|chr6 (42850333-42850155) | |
| 27-183, gnl|danRer3|chr1 (2575156-2575318) | |
| 27-183, gnl|fr1|chrUn (13713232-13713065) | |
| 27-183, gnl|galGal2|chr14 (8023651-8023468) | |
| 27-183, gnl|hg17|chr16 (785675-785853) | |
| 27-183, gnl|Hg17|chr16 (785684-785840) | |
| 27-183, gnl|mm7|chr17 (23904226-23904048) | |
| 27-183, gnl|Mm7|chr17 (23904215-23904059) | |
| 27-183, gnl|monDom2|scaffold_49 (10333491-10333675) | |
| 27-183, gnl|rheMac2|chr20 (790674-790852) | |
| 27-183, gnl|rn3|chr10 (14990046-14989868) | |
| 27-183, gnl|tetNig1|chr18 (8266364-8266220) | |
| 27-183, gnl|xenTro1|scaffold_142 (1405841-1405674) | |
| 310-457, gnl|bosTau2|chr25 (1126090-1125943) | |
| 310-457, gnl|canFam2|chr6 (42849336-42849218) | |
| 310-457, gnl|danRer3|chr1 (2581497-2581615) | |
| 310-457, gnl|fr1|chrUn (13711523-13711406) | |
| 310-457, gnl|galGal2|chr14 (8021517-8021399) | |
| 310-457, gnl|hg17|chr16 (786715-786833) | |
| 310-457, gnl|Hg17|chr16 (786718-786865) | |
| 310-457, gnl|mm7|chr17 (23903254-23903136) | |
| 310-457, gnl|Mm7|chr17 (23903249-23903102) | |
| 310-457, gnl|monDom2|scaffold_119 (3460733-3460619) | |
| 310-457, gnl|rheMac2|chr20 (791691-791809) | |
| 310-457, gnl|rn3|chr10 (14989136-14989018) | |
| 310-457, gnl|tetNig1|chr18 (8265021-8264904) | |
| 310-457, gnl|xenTro1|scaffold_142 (1399988-1399872) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-183, gnl|bosTau2|chr25 (1127084-1126928) | |
| 27-183, gnl|canFam2|chr6 (42850333-42850155) | |
| 27-183, gnl|danRer3|chr1 (2575156-2575318) | |
| 27-183, gnl|fr1|chrUn (13713232-13713065) | |
| 27-183, gnl|galGal2|chr14 (8023651-8023468) | |
| 27-183, gnl|hg17|chr16 (785675-785853) | |
| 27-183, gnl|Hg17|chr16 (785684-785840) | |
| 27-183, gnl|mm7|chr17 (23904226-23904048) | |
| 27-183, gnl|Mm7|chr17 (23904215-23904059) | |
| 27-183, gnl|monDom2|scaffold_49 (10333491-10333675) | |
| 27-183, gnl|rheMac2|chr20 (790674-790852) | |
| 27-183, gnl|rn3|chr10 (14990046-14989868) | |
| 27-183, gnl|tetNig1|chr18 (8266364-8266220) | |
| 27-183, gnl|xenTro1|scaffold_142 (1405841-1405674) | |
| 310-457, gnl|bosTau2|chr25 (1126090-1125943) | |
| 310-457, gnl|canFam2|chr6 (42849336-42849218) | |
| 310-457, gnl|danRer3|chr1 (2581497-2581615) | |
| 310-457, gnl|fr1|chrUn (13711523-13711406) | |
| 310-457, gnl|galGal2|chr14 (8021517-8021399) | |
| 310-457, gnl|hg17|chr16 (786715-786833) | |
| 310-457, gnl|Hg17|chr16 (786718-786865) | |
| 310-457, gnl|mm7|chr17 (23903254-23903136) | |
| 310-457, gnl|Mm7|chr17 (23903249-23903102) | |
| 310-457, gnl|monDom2|scaffold_119 (3460733-3460619) | |
| 310-457, gnl|rheMac2|chr20 (791691-791809) | |
| 310-457, gnl|rn3|chr10 (14989136-14989018) | |
| 310-457, gnl|tetNig1|chr18 (8265021-8264904) | |
| 310-457, gnl|xenTro1|scaffold_142 (1399988-1399872) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| elu (0.385356) | |
| fce (0.271592) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| eru (0.120048) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| fce (0.271592) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| eru (0.120048) |